Variant report

Variant	rs13278343
Chromosome Location	chr8:51296699-51296700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs10086867	0.88[CEU][hapmap];0.92[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10093604	0.82[JPT][hapmap]
rs10094935	0.91[JPT][hapmap]
rs10109835	1.00[JPT][hapmap]
rs10504099	0.91[JPT][hapmap]
rs10808817	0.91[JPT][hapmap]
rs10957828	0.82[JPT][hapmap]
rs10957853	1.00[JPT][hapmap]
rs1117213	0.91[CHB][hapmap];0.81[YRI][hapmap];0.82[ASN][1000 genomes]
rs11778998	0.82[JPT][hapmap]
rs11784719	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs11991940	0.82[JPT][hapmap]
rs12056425	0.91[JPT][hapmap]
rs12056426	1.00[JPT][hapmap]
rs12544473	0.88[CEU][hapmap];0.88[JPT][hapmap]
rs12544631	0.91[JPT][hapmap]
rs12545003	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs12545915	0.91[JPT][hapmap]
rs12545927	0.88[CEU][hapmap];0.84[JPT][hapmap]
rs12546829	0.86[AFR][1000 genomes]
rs12675994	0.95[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12677964	0.82[JPT][hapmap]
rs12679356	0.82[JPT][hapmap]
rs12679464	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12680748	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs12681918	0.84[EUR][1000 genomes]
rs13248969	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs13249415	0.91[JPT][hapmap]
rs13251587	0.91[JPT][hapmap]
rs13251725	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs13252320	1.00[JPT][hapmap]
rs13253758	0.91[JPT][hapmap]
rs13259996	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13260021	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs13260288	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs13275607	0.90[JPT][hapmap]
rs13282956	1.00[JPT][hapmap]
rs1349316	0.83[JPT][hapmap]
rs1349317	0.91[JPT][hapmap]
rs1375942	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.95[ASN][1000 genomes]
rs1375944	0.81[CEU][hapmap];0.87[JPT][hapmap]
rs1375945	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs1375947	0.84[EUR][1000 genomes]
rs1375948	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs1380789	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs1380790	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs1380791	0.91[JPT][hapmap]
rs1380792	0.87[CEU][hapmap];0.91[JPT][hapmap]
rs1450127	0.82[JPT][hapmap]
rs1450132	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs1450135	0.91[JPT][hapmap]
rs1597426	0.91[JPT][hapmap]
rs1597427	0.84[EUR][1000 genomes]
rs1597428	0.91[JPT][hapmap]
rs1597430	0.91[JPT][hapmap]
rs1597432	0.91[CHB][hapmap];0.81[YRI][hapmap];0.82[ASN][1000 genomes]
rs1597433	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs16914780	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs16914781	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17770910	0.86[CEU][hapmap];0.86[JPT][hapmap]
rs1824462	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs1868638	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs1868639	0.88[CEU][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes]
rs1901055	0.91[JPT][hapmap]
rs1901056	0.91[JPT][hapmap]
rs1947254	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs2084590	0.82[JPT][hapmap]
rs2167157	0.88[CEU][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs2385812	0.82[JPT][hapmap]
rs2923059	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs2923062	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2957598	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs2957600	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957601	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs35063719	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs3919764	0.84[EUR][1000 genomes]
rs4147344	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4242460	0.84[ASN][1000 genomes]
rs4256602	0.92[CHB][hapmap];0.83[ASN][1000 genomes]
rs4292700	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs4330704	0.91[JPT][hapmap]
rs4339654	0.91[CHB][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4364645	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4398931	0.91[JPT][hapmap]
rs4410921	0.91[CHB][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4413786	0.88[EUR][1000 genomes]
rs4448284	0.91[JPT][hapmap]
rs4529480	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4534138	0.91[CHB][hapmap];0.81[YRI][hapmap];0.82[ASN][1000 genomes]
rs4543555	0.91[JPT][hapmap]
rs4577969	0.82[JPT][hapmap]
rs4604450	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs4633068	0.91[JPT][hapmap]
rs4639524	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4873129	0.82[JPT][hapmap]
rs4873133	0.82[JPT][hapmap]
rs4873134	0.82[JPT][hapmap]
rs4873135	0.82[JPT][hapmap]
rs4873137	0.81[JPT][hapmap]
rs4873142	0.91[JPT][hapmap]
rs4873419	0.82[JPT][hapmap]
rs4873420	0.82[JPT][hapmap]
rs4873428	0.82[JPT][hapmap]
rs4873431	0.82[JPT][hapmap]
rs4873433	0.82[JPT][hapmap]
rs4873442	0.91[JPT][hapmap]
rs4873447	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs4873451	0.88[CEU][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs4873452	0.84[EUR][1000 genomes]
rs4873453	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs62515888	0.82[EUR][1000 genomes]
rs6473114	0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6981805	0.91[JPT][hapmap]
rs6983498	0.82[JPT][hapmap]
rs6986896	0.81[JPT][hapmap]
rs6989084	0.82[EUR][1000 genomes]
rs6990514	0.83[EUR][1000 genomes]
rs6994415	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6995334	1.00[CEU][hapmap];0.84[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6999627	0.91[JPT][hapmap]
rs7001686	0.82[JPT][hapmap]
rs7005672	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs7015950	0.91[CHB][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7016161	0.82[JPT][hapmap]
rs7017642	0.91[JPT][hapmap]
rs7018082	0.82[JPT][hapmap]
rs7464491	0.91[JPT][hapmap]
rs7816983	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7821189	0.91[JPT][hapmap]
rs7822367	0.84[EUR][1000 genomes]
rs7834452	0.84[EUR][1000 genomes]
rs7839253	0.91[CHB][hapmap];0.93[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7845433	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs870754	0.82[JPT][hapmap]
rs968944	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs968945	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs968947	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs983055	1.00[CEU][hapmap];0.84[JPT][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51293800-51299200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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