Variant report

Variant	rs10109835
Chromosome Location	chr8:51175693-51175694
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 205 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:202)

rs_ID	r²[population]
rs1000638	0.88[JPT][hapmap]
rs1000639	0.88[JPT][hapmap]
rs10086867	0.88[JPT][hapmap]
rs10092399	0.94[CEU][hapmap];0.81[CHB][hapmap]
rs10093604	0.88[JPT][hapmap]
rs10094935	0.94[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096871	0.88[JPT][hapmap]
rs10108468	0.90[CHB][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10113812	0.94[CEU][hapmap];0.81[CHB][hapmap]
rs10504094	0.88[JPT][hapmap]
rs10504096	1.00[JPT][hapmap]
rs10504098	0.88[JPT][hapmap]
rs10504099	0.83[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10808817	0.88[JPT][hapmap]
rs10957813	0.88[JPT][hapmap]
rs10957814	0.88[JPT][hapmap]
rs10957828	0.88[JPT][hapmap]
rs10957853	0.82[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11773993	0.87[JPT][hapmap]
rs11778998	0.88[JPT][hapmap]
rs11784719	0.88[JPT][hapmap]
rs11986160	0.88[JPT][hapmap]
rs11991940	0.88[JPT][hapmap]
rs12056425	0.83[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12056426	0.83[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12542067	0.88[JPT][hapmap]
rs12544473	0.86[JPT][hapmap]
rs12544631	0.95[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12544986	1.00[JPT][hapmap]
rs12545365	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12545915	0.83[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12545927	0.81[CHB][hapmap]
rs12548940	0.82[CEU][hapmap]
rs12677522	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12677964	0.89[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12679317	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12679356	0.80[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12680748	0.88[JPT][hapmap]
rs12681918	0.86[ASN][1000 genomes]
rs13248969	0.88[JPT][hapmap]
rs13249415	0.88[JPT][hapmap]
rs13251587	0.94[CEU][hapmap];0.88[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13251725	0.88[JPT][hapmap]
rs13252320	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs13253758	0.88[JPT][hapmap]
rs13260021	0.87[JPT][hapmap]
rs13260265	0.88[JPT][hapmap]
rs13260288	0.88[JPT][hapmap]
rs13275607	0.83[CHB][hapmap]
rs13278343	1.00[JPT][hapmap]
rs13282956	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs13340639	0.87[JPT][hapmap]
rs1349316	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs1349317	0.95[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap]
rs1375942	0.88[JPT][hapmap]
rs1375945	0.88[JPT][hapmap]
rs1375947	0.86[ASN][1000 genomes]
rs1375948	0.88[JPT][hapmap]
rs1380789	0.88[JPT][hapmap]
rs1380790	0.88[JPT][hapmap]
rs1380791	0.88[JPT][hapmap]
rs1380792	0.88[JPT][hapmap]
rs1450127	0.88[JPT][hapmap];0.82[EUR][1000 genomes]
rs1450132	0.88[JPT][hapmap]
rs1450135	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1597426	0.94[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap]
rs1597427	0.86[ASN][1000 genomes]
rs1597428	0.83[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1597429	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1597430	0.83[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1597431	0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16914250	1.00[JPT][hapmap]
rs16914318	0.87[JPT][hapmap]
rs16914321	0.87[JPT][hapmap]
rs16914346	0.88[JPT][hapmap]
rs16914423	0.87[JPT][hapmap]
rs16914760	0.87[JPT][hapmap]
rs16914781	0.88[JPT][hapmap]
rs17770910	0.86[CHB][hapmap]
rs1824462	0.88[JPT][hapmap]
rs1868638	0.86[ASN][1000 genomes]
rs1868639	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1901050	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1901055	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs1901056	0.88[JPT][hapmap]
rs1903311	0.88[JPT][hapmap]
rs1906070	1.00[JPT][hapmap]
rs203612	0.88[JPT][hapmap]
rs203616	0.88[JPT][hapmap]
rs203624	0.88[JPT][hapmap]
rs203626	0.88[JPT][hapmap]
rs203632	0.88[JPT][hapmap]
rs203908	0.88[JPT][hapmap]
rs203925	0.88[JPT][hapmap]
rs203928	0.87[JPT][hapmap]
rs203932	0.88[JPT][hapmap]
rs203935	0.88[JPT][hapmap]
rs203936	0.88[JPT][hapmap]
rs203939	0.88[JPT][hapmap]
rs203940	0.88[JPT][hapmap]
rs203947	0.88[JPT][hapmap]
rs203949	0.88[JPT][hapmap]
rs2084590	0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs2084591	0.81[EUR][1000 genomes]
rs2167157	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs2385812	0.88[JPT][hapmap]
rs2840054	0.88[ASN][1000 genomes]
rs28510664	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2923058	0.87[JPT][hapmap]
rs2923059	0.88[JPT][hapmap]
rs2923062	0.88[JPT][hapmap]
rs2957600	0.88[JPT][hapmap]
rs2957601	0.88[JPT][hapmap]
rs34217744	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34788367	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34908431	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35516514	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35857674	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3919764	0.84[ASN][1000 genomes]
rs3922033	0.89[CEU][hapmap]
rs4147344	0.88[JPT][hapmap]
rs420489	0.88[JPT][hapmap]
rs4292700	0.88[JPT][hapmap]
rs4330704	0.86[JPT][hapmap]
rs4364645	0.88[JPT][hapmap]
rs4398931	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs4448283	0.81[EUR][1000 genomes]
rs4448284	0.83[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4529480	0.88[JPT][hapmap]
rs4543555	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs4577969	0.83[CHB][hapmap]
rs4618709	0.86[ASN][1000 genomes]
rs4633068	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs4639524	0.88[JPT][hapmap]
rs4873128	0.88[JPT][hapmap]
rs4873129	0.88[JPT][hapmap]
rs4873132	0.81[EUR][1000 genomes]
rs4873133	0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs4873134	0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs4873135	0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs4873137	0.87[JPT][hapmap]
rs4873141	0.94[CEU][hapmap];0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873142	0.88[JPT][hapmap]
rs4873405	0.88[JPT][hapmap]
rs4873406	0.88[JPT][hapmap]
rs4873408	0.88[JPT][hapmap]
rs4873409	0.87[JPT][hapmap]
rs4873411	0.88[JPT][hapmap]
rs4873413	0.88[JPT][hapmap]
rs4873415	0.88[JPT][hapmap]
rs4873417	0.88[JPT][hapmap]
rs4873418	0.88[JPT][hapmap]
rs4873419	0.88[JPT][hapmap]
rs4873420	0.88[JPT][hapmap]
rs4873427	0.81[EUR][1000 genomes]
rs4873428	0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs4873431	0.88[JPT][hapmap]
rs4873433	0.88[JPT][hapmap]
rs4873438	0.95[CEU][hapmap];0.91[CHB][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873439	0.94[CEU][hapmap];0.91[CHB][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873442	0.95[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap]
rs4873443	0.95[CEU][hapmap];0.91[CHB][hapmap]
rs4873447	0.88[JPT][hapmap]
rs4873451	0.86[ASN][1000 genomes]
rs4873452	0.86[ASN][1000 genomes]
rs62515888	0.88[ASN][1000 genomes]
rs6981805	0.88[JPT][hapmap]
rs6983498	0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs6986896	0.87[JPT][hapmap]
rs6988843	0.88[JPT][hapmap]
rs6989084	0.86[ASN][1000 genomes]
rs6990514	0.86[ASN][1000 genomes]
rs6991753	0.88[JPT][hapmap]
rs6996646	0.88[JPT][hapmap]
rs6999627	0.94[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap]
rs6999870	0.88[JPT][hapmap]
rs7000325	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001686	0.88[JPT][hapmap]
rs7002235	0.88[JPT][hapmap]
rs7004088	0.88[JPT][hapmap]
rs7013995	0.88[JPT][hapmap]
rs7016161	0.88[JPT][hapmap]
rs7017642	0.95[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap]
rs7018082	0.88[JPT][hapmap]
rs721441	0.88[JPT][hapmap]
rs7464491	0.83[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7817040	0.80[AMR][1000 genomes]
rs7821189	0.95[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822367	0.86[ASN][1000 genomes]
rs7825063	0.88[JPT][hapmap]
rs7834452	0.86[ASN][1000 genomes]
rs7835144	0.82[ASN][1000 genomes]
rs870754	0.88[JPT][hapmap]
rs884561	0.88[JPT][hapmap]
rs898520	0.88[JPT][hapmap]
rs9298278	0.88[JPT][hapmap]
rs9298279	0.88[JPT][hapmap]
rs9298295	0.94[CEU][hapmap];0.99[EUR][1000 genomes]
rs968944	0.88[JPT][hapmap]
rs968945	0.88[JPT][hapmap]
rs968947	0.88[JPT][hapmap]
rs987356	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv524203	chr8:51161232-51188675	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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