Variant report

Variant	rs7835144
Chromosome Location	chr8:51218611-51218612
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10094935	0.82[ASN][1000 genomes]
rs10108468	0.82[ASN][1000 genomes]
rs10504099	0.83[ASN][1000 genomes]
rs10957853	0.84[ASN][1000 genomes]
rs1160764	0.86[ASN][1000 genomes]
rs1160795	0.86[ASN][1000 genomes]
rs11784464	0.86[ASN][1000 genomes]
rs12056425	0.84[ASN][1000 genomes]
rs12056426	0.84[ASN][1000 genomes]
rs12545365	0.84[ASN][1000 genomes]
rs12545915	0.84[ASN][1000 genomes]
rs12677522	0.84[ASN][1000 genomes]
rs12677964	0.84[ASN][1000 genomes]
rs12678703	0.84[ASN][1000 genomes]
rs12679317	0.82[ASN][1000 genomes]
rs12679356	0.84[ASN][1000 genomes]
rs12681918	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1375947	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1450135	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1597427	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1597428	0.84[ASN][1000 genomes]
rs1597429	0.84[ASN][1000 genomes]
rs1597430	0.84[ASN][1000 genomes]
rs1597431	0.84[ASN][1000 genomes]
rs1868638	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1868639	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1901050	0.84[ASN][1000 genomes]
rs2167157	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2840054	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34651805	0.86[ASN][1000 genomes]
rs34908431	0.80[ASN][1000 genomes]
rs3919764	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4448284	0.84[ASN][1000 genomes]
rs4618709	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4873143	0.86[ASN][1000 genomes]
rs4873451	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4873452	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62515888	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6989084	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6990514	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7000325	0.82[ASN][1000 genomes]
rs7003725	0.86[ASN][1000 genomes]
rs7464491	0.84[ASN][1000 genomes]
rs7821189	0.82[ASN][1000 genomes]
rs7822367	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7822550	0.86[ASN][1000 genomes]
rs7834452	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv6185	chr8:51213648-51237196	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3480460	chr8:51217513-51219215	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3480461	chr8:51217513-51219215	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51209400-51220600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links