Variant report

Variant	rs12679317
Chromosome Location	chr8:51165815-51165816
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10094935	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10098057	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10108468	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10504098	0.82[EUR][1000 genomes]
rs10504099	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10957813	0.82[EUR][1000 genomes]
rs10957814	0.82[EUR][1000 genomes]
rs10957826	0.87[AMR][1000 genomes]
rs10957853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11775978	0.82[EUR][1000 genomes]
rs11778998	0.83[EUR][1000 genomes]
rs11780070	0.80[EUR][1000 genomes]
rs11781981	0.83[EUR][1000 genomes]
rs11786703	0.80[EUR][1000 genomes]
rs11989367	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11991940	0.83[EUR][1000 genomes]
rs12056425	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12056426	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12542067	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12544631	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12545365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12545915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12677522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12677964	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12679356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12681918	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs13251587	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13277538	0.82[EUR][1000 genomes]
rs1375947	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1450127	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1450135	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1597427	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1597428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1597429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1597430	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1597431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16914376	0.82[EUR][1000 genomes]
rs16914459	0.83[EUR][1000 genomes]
rs1868638	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1868639	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1901050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2084589	0.83[AMR][1000 genomes]
rs2084590	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2084591	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2167157	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2840054	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28510664	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34217744	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34722367	0.82[EUR][1000 genomes]
rs34788367	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34908431	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34997857	0.80[EUR][1000 genomes]
rs35516514	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35857674	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36006902	0.82[EUR][1000 genomes]
rs3919764	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4448283	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4448284	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4618709	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4873126	0.81[EUR][1000 genomes]
rs4873127	0.81[EUR][1000 genomes]
rs4873128	0.82[EUR][1000 genomes]
rs4873129	0.82[EUR][1000 genomes]
rs4873131	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4873132	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4873133	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4873134	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4873135	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4873141	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4873408	0.83[AMR][1000 genomes]
rs4873412	0.81[EUR][1000 genomes]
rs4873413	0.81[EUR][1000 genomes]
rs4873415	0.82[EUR][1000 genomes]
rs4873416	0.82[EUR][1000 genomes]
rs4873417	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4873418	0.82[EUR][1000 genomes]
rs4873419	0.83[EUR][1000 genomes]
rs4873420	0.83[EUR][1000 genomes]
rs4873421	0.83[EUR][1000 genomes]
rs4873426	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4873427	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4873428	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4873438	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4873439	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4873451	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4873452	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs62515888	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs62516685	0.82[EUR][1000 genomes]
rs62516687	0.81[EUR][1000 genomes]
rs6983498	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6986896	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6989084	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6990514	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6991753	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7000325	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7001686	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7002235	0.82[EUR][1000 genomes]
rs7010037	0.80[EUR][1000 genomes]
rs7016161	0.83[EUR][1000 genomes]
rs7018082	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7386487	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7464491	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7817040	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7817638	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7821189	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7822367	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7824938	0.82[EUR][1000 genomes]
rs7825053	0.82[EUR][1000 genomes]
rs7825063	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7834452	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7835144	0.82[ASN][1000 genomes]
rs7835849	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs870754	0.83[EUR][1000 genomes]
rs884561	0.82[EUR][1000 genomes]
rs898520	0.82[EUR][1000 genomes]
rs9298295	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv524203	chr8:51161232-51188675	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51160200-51167200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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