Variant report

Variant	rs10957826
Chromosome Location	chr8:51126329-51126330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10098057	0.86[AMR][1000 genomes]
rs10504099	0.89[AMR][1000 genomes]
rs10957853	0.87[AMR][1000 genomes]
rs11989367	0.87[AMR][1000 genomes]
rs12056425	0.89[AMR][1000 genomes]
rs12056426	0.89[AMR][1000 genomes]
rs12542067	0.87[AMR][1000 genomes]
rs12545365	0.87[AMR][1000 genomes]
rs12545915	0.87[AMR][1000 genomes]
rs12677522	0.87[AMR][1000 genomes]
rs12677964	0.86[AMR][1000 genomes]
rs12679317	0.87[AMR][1000 genomes]
rs12679356	0.87[AMR][1000 genomes]
rs1450127	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1597428	0.87[AMR][1000 genomes]
rs1597429	0.87[AMR][1000 genomes]
rs1597430	0.87[AMR][1000 genomes]
rs1597431	0.87[AMR][1000 genomes]
rs1901050	0.87[AMR][1000 genomes]
rs2084589	0.84[AMR][1000 genomes]
rs2084590	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2084591	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34788367	0.90[AMR][1000 genomes]
rs34908431	0.92[AMR][1000 genomes]
rs4448283	0.92[AMR][1000 genomes]
rs4448284	0.89[AMR][1000 genomes]
rs4873131	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4873132	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4873133	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4873134	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4873135	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4873408	0.85[AMR][1000 genomes]
rs4873417	0.87[AMR][1000 genomes]
rs4873426	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4873427	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4873428	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6983498	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6986896	0.87[AMR][1000 genomes]
rs6991753	0.87[AMR][1000 genomes]
rs7001686	0.87[AMR][1000 genomes]
rs7018082	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7386487	0.88[AMR][1000 genomes]
rs7464491	0.89[AMR][1000 genomes]
rs7817040	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7817638	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7825063	0.87[AMR][1000 genomes]
rs7835849	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv8341	chr8:51123911-51130847	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	esv2829897	chr8:51125957-51135544	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51125800-51127200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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