Variant report

Variant	rs2084589
Chromosome Location	chr8:51122410-51122411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10098057	0.85[AMR][1000 genomes]
rs10504098	0.80[EUR][1000 genomes]
rs10504099	0.86[AMR][1000 genomes]
rs10957813	0.80[EUR][1000 genomes]
rs10957814	0.80[EUR][1000 genomes]
rs10957826	0.84[AMR][1000 genomes]
rs10957853	0.83[AMR][1000 genomes]
rs11775978	0.80[EUR][1000 genomes]
rs11778998	0.81[EUR][1000 genomes]
rs11780070	0.81[EUR][1000 genomes]
rs11781981	0.81[EUR][1000 genomes]
rs11786703	0.81[EUR][1000 genomes]
rs11989367	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11991940	0.81[EUR][1000 genomes]
rs12056425	0.86[AMR][1000 genomes]
rs12056426	0.86[AMR][1000 genomes]
rs12542067	0.86[AMR][1000 genomes]
rs12545365	0.83[AMR][1000 genomes]
rs12545915	0.83[AMR][1000 genomes]
rs12677522	0.83[AMR][1000 genomes]
rs12677964	0.82[AMR][1000 genomes]
rs12679317	0.83[AMR][1000 genomes]
rs12679356	0.83[AMR][1000 genomes]
rs13277538	0.80[EUR][1000 genomes]
rs1450127	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1597428	0.83[AMR][1000 genomes]
rs1597429	0.83[AMR][1000 genomes]
rs1597430	0.83[AMR][1000 genomes]
rs1597431	0.83[AMR][1000 genomes]
rs16914376	0.80[EUR][1000 genomes]
rs16914459	0.81[EUR][1000 genomes]
rs1901050	0.83[AMR][1000 genomes]
rs2084590	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2084591	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34722367	0.80[EUR][1000 genomes]
rs34788367	0.87[AMR][1000 genomes]
rs34908431	0.88[AMR][1000 genomes]
rs36006902	0.80[EUR][1000 genomes]
rs4448283	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4448284	0.86[AMR][1000 genomes]
rs4873128	0.80[EUR][1000 genomes]
rs4873129	0.80[EUR][1000 genomes]
rs4873131	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4873132	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4873133	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4873134	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4873135	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4873408	0.83[AMR][1000 genomes]
rs4873414	0.80[EUR][1000 genomes]
rs4873415	0.80[EUR][1000 genomes]
rs4873416	0.80[EUR][1000 genomes]
rs4873417	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4873418	0.80[EUR][1000 genomes]
rs4873419	0.81[EUR][1000 genomes]
rs4873420	0.81[EUR][1000 genomes]
rs4873421	0.81[EUR][1000 genomes]
rs4873426	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4873427	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4873428	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62516685	0.80[EUR][1000 genomes]
rs62516687	0.81[EUR][1000 genomes]
rs6983498	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6986896	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6988843	0.81[AMR][1000 genomes]
rs6991753	0.86[AMR][1000 genomes]
rs7001686	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7002235	0.80[EUR][1000 genomes]
rs7016161	0.81[EUR][1000 genomes]
rs7018082	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7386487	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7464491	0.86[AMR][1000 genomes]
rs7817040	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7817638	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7824938	0.80[EUR][1000 genomes]
rs7825053	0.80[EUR][1000 genomes]
rs7825063	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7835849	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs870754	0.81[EUR][1000 genomes]
rs884561	0.80[EUR][1000 genomes]
rs898520	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51122200-51124800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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