Variant report

Variant	rs11781981
Chromosome Location	chr8:51112958-51112959
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs1000638	0.89[ASN][1000 genomes]
rs1000639	0.89[ASN][1000 genomes]
rs10096871	0.92[ASN][1000 genomes]
rs10098057	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10504094	0.89[ASN][1000 genomes]
rs10504096	0.93[ASN][1000 genomes]
rs10504098	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10504099	0.83[EUR][1000 genomes]
rs10957813	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10957814	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10957853	0.83[EUR][1000 genomes]
rs11775978	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11778998	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11780070	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11786703	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989367	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11991940	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12056425	0.84[EUR][1000 genomes]
rs12056426	0.84[EUR][1000 genomes]
rs12542067	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12545263	0.93[ASN][1000 genomes]
rs12545365	0.83[EUR][1000 genomes]
rs12545915	0.83[EUR][1000 genomes]
rs12677522	0.83[EUR][1000 genomes]
rs12677964	0.82[EUR][1000 genomes]
rs12679317	0.83[EUR][1000 genomes]
rs12679356	0.83[EUR][1000 genomes]
rs13271983	0.92[ASN][1000 genomes]
rs13277538	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1450127	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs149992	0.82[ASN][1000 genomes]
rs1597428	0.81[EUR][1000 genomes]
rs1597429	0.83[EUR][1000 genomes]
rs1597430	0.83[EUR][1000 genomes]
rs1597431	0.83[EUR][1000 genomes]
rs16914376	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16914459	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17758599	0.87[ASN][1000 genomes]
rs1901050	0.83[EUR][1000 genomes]
rs1903311	0.93[ASN][1000 genomes]
rs203612	0.93[ASN][1000 genomes]
rs203616	0.93[ASN][1000 genomes]
rs203621	0.90[ASN][1000 genomes]
rs203623	0.89[ASN][1000 genomes]
rs203624	0.92[ASN][1000 genomes]
rs203626	0.89[ASN][1000 genomes]
rs203632	0.91[ASN][1000 genomes]
rs203908	0.91[ASN][1000 genomes]
rs203928	0.90[ASN][1000 genomes]
rs203932	0.89[ASN][1000 genomes]
rs203933	0.89[ASN][1000 genomes]
rs203935	0.91[ASN][1000 genomes]
rs203936	0.89[ASN][1000 genomes]
rs203937	0.91[ASN][1000 genomes]
rs203938	0.91[ASN][1000 genomes]
rs203939	0.89[ASN][1000 genomes]
rs203940	0.91[ASN][1000 genomes]
rs203947	0.87[ASN][1000 genomes]
rs203949	0.90[ASN][1000 genomes]
rs203960	0.89[ASN][1000 genomes]
rs2084589	0.81[EUR][1000 genomes]
rs2084590	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2084591	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34047312	0.93[ASN][1000 genomes]
rs34217744	0.84[AMR][1000 genomes]
rs34641787	0.93[ASN][1000 genomes]
rs34722367	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34788367	0.86[EUR][1000 genomes]
rs34908431	0.86[EUR][1000 genomes]
rs34997857	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35516514	0.83[AMR][1000 genomes]
rs35857674	0.83[AMR][1000 genomes]
rs35989044	0.89[ASN][1000 genomes]
rs36006902	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs420489	0.93[ASN][1000 genomes]
rs4448283	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4448284	0.84[EUR][1000 genomes]
rs4873126	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873127	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873128	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873129	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873131	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873132	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873133	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873134	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873135	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873141	0.82[AMR][1000 genomes]
rs4873405	0.91[ASN][1000 genomes]
rs4873406	0.93[ASN][1000 genomes]
rs4873407	0.93[ASN][1000 genomes]
rs4873408	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4873412	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4873413	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873414	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873415	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873416	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873417	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4873418	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873419	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873420	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873421	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873426	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873427	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873428	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873438	0.84[AMR][1000 genomes]
rs4873439	0.85[AMR][1000 genomes]
rs56007637	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56725	0.93[ASN][1000 genomes]
rs58958741	0.80[AFR][1000 genomes]
rs62515375	0.89[ASN][1000 genomes]
rs62516672	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62516685	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62516687	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6472947	0.88[ASN][1000 genomes]
rs6983498	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6986896	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6988843	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6991753	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6996646	0.92[ASN][1000 genomes]
rs7001686	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7002235	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7010037	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7013995	0.91[ASN][1000 genomes]
rs7016161	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7018082	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs721441	0.92[ASN][1000 genomes]
rs7386487	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7464491	0.84[EUR][1000 genomes]
rs7817040	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7817638	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7820951	0.92[ASN][1000 genomes]
rs7824938	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7825053	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7825063	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7835849	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs870754	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs884561	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs898520	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51112200-51113000	Enhancers	HMEC	breast
2	chr8:51112400-51113000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:51112400-51113200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:51112800-51113000	Active TSS	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links