Variant report

Variant	rs4873407
Chromosome Location	chr8:51044416-51044417
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs1000638	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1000639	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10096871	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10098057	0.90[ASN][1000 genomes]
rs10504094	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10504096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504098	0.91[ASN][1000 genomes]
rs10957764	0.90[EUR][1000 genomes]
rs10957802	0.94[EUR][1000 genomes]
rs10957813	0.91[ASN][1000 genomes]
rs10957814	0.91[ASN][1000 genomes]
rs11775978	0.90[ASN][1000 genomes]
rs11778998	0.88[ASN][1000 genomes]
rs11780070	0.91[ASN][1000 genomes]
rs11781981	0.93[ASN][1000 genomes]
rs11786703	0.93[ASN][1000 genomes]
rs11989367	0.81[ASN][1000 genomes]
rs11991940	0.91[ASN][1000 genomes]
rs12542067	0.83[ASN][1000 genomes]
rs12545107	0.90[EUR][1000 genomes]
rs12545263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251700	0.99[EUR][1000 genomes]
rs13270234	0.97[EUR][1000 genomes]
rs13271983	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13277538	0.91[ASN][1000 genomes]
rs13280089	0.94[EUR][1000 genomes]
rs1450127	0.84[ASN][1000 genomes]
rs149992	0.81[ASN][1000 genomes]
rs16914250	0.84[ASN][1000 genomes]
rs16914376	0.91[ASN][1000 genomes]
rs16914459	0.93[ASN][1000 genomes]
rs17686196	0.89[EUR][1000 genomes]
rs17758599	0.86[ASN][1000 genomes]
rs1903311	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1906070	0.82[ASN][1000 genomes]
rs203612	0.92[ASN][1000 genomes]
rs203616	0.92[ASN][1000 genomes]
rs203621	0.89[ASN][1000 genomes]
rs203623	0.88[ASN][1000 genomes]
rs203624	0.91[ASN][1000 genomes]
rs203626	0.88[ASN][1000 genomes]
rs203632	0.90[ASN][1000 genomes]
rs203908	0.90[ASN][1000 genomes]
rs203928	0.88[ASN][1000 genomes]
rs203932	0.87[ASN][1000 genomes]
rs203933	0.87[ASN][1000 genomes]
rs203935	0.90[ASN][1000 genomes]
rs203936	0.87[ASN][1000 genomes]
rs203937	0.90[ASN][1000 genomes]
rs203938	0.90[ASN][1000 genomes]
rs203939	0.87[ASN][1000 genomes]
rs203940	0.90[ASN][1000 genomes]
rs203947	0.86[ASN][1000 genomes]
rs203949	0.88[ASN][1000 genomes]
rs203960	0.87[ASN][1000 genomes]
rs2084590	0.84[ASN][1000 genomes]
rs2084591	0.84[ASN][1000 genomes]
rs2106156	0.90[EUR][1000 genomes]
rs2157736	0.90[EUR][1000 genomes]
rs34047312	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34160877	0.80[EUR][1000 genomes]
rs34641787	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34722367	0.91[ASN][1000 genomes]
rs34908792	0.95[EUR][1000 genomes]
rs34997857	0.93[ASN][1000 genomes]
rs35093761	0.86[EUR][1000 genomes]
rs35122483	0.90[EUR][1000 genomes]
rs35418717	0.93[EUR][1000 genomes]
rs35989044	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36006902	0.91[ASN][1000 genomes]
rs420489	0.92[ASN][1000 genomes]
rs4873126	0.93[ASN][1000 genomes]
rs4873127	0.93[ASN][1000 genomes]
rs4873128	0.91[ASN][1000 genomes]
rs4873129	0.91[ASN][1000 genomes]
rs4873131	0.84[ASN][1000 genomes]
rs4873132	0.84[ASN][1000 genomes]
rs4873133	0.84[ASN][1000 genomes]
rs4873134	0.84[ASN][1000 genomes]
rs4873135	0.84[ASN][1000 genomes]
rs4873405	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873408	0.90[ASN][1000 genomes]
rs4873412	0.90[ASN][1000 genomes]
rs4873413	0.91[ASN][1000 genomes]
rs4873414	0.91[ASN][1000 genomes]
rs4873415	0.93[ASN][1000 genomes]
rs4873416	0.91[ASN][1000 genomes]
rs4873417	0.88[ASN][1000 genomes]
rs4873418	0.91[ASN][1000 genomes]
rs4873419	0.91[ASN][1000 genomes]
rs4873420	0.91[ASN][1000 genomes]
rs4873421	0.91[ASN][1000 genomes]
rs4873426	0.84[ASN][1000 genomes]
rs4873427	0.84[ASN][1000 genomes]
rs4873428	0.84[ASN][1000 genomes]
rs55889053	0.84[ASN][1000 genomes]
rs56007637	0.93[ASN][1000 genomes]
rs56413317	0.93[EUR][1000 genomes]
rs56725	0.92[ASN][1000 genomes]
rs62515375	0.87[ASN][1000 genomes]
rs62516672	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62516685	0.91[ASN][1000 genomes]
rs62516686	0.94[EUR][1000 genomes]
rs62516687	0.91[ASN][1000 genomes]
rs6472947	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6983498	0.84[ASN][1000 genomes]
rs6986896	0.88[ASN][1000 genomes]
rs6988843	0.90[ASN][1000 genomes]
rs6991753	0.88[ASN][1000 genomes]
rs6996646	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7001686	0.88[ASN][1000 genomes]
rs7002235	0.91[ASN][1000 genomes]
rs7010037	0.91[ASN][1000 genomes]
rs7013995	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7016161	0.91[ASN][1000 genomes]
rs721441	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7386487	0.88[ASN][1000 genomes]
rs7817040	0.84[ASN][1000 genomes]
rs7817638	0.84[ASN][1000 genomes]
rs7820951	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7824938	0.88[ASN][1000 genomes]
rs7825053	0.88[ASN][1000 genomes]
rs7825063	0.86[ASN][1000 genomes]
rs7835849	0.84[ASN][1000 genomes]
rs870754	0.93[ASN][1000 genomes]
rs884561	0.91[ASN][1000 genomes]
rs898520	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv6184	chr8:50997525-51060432	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv539606	chr8:51006600-51057478	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1829361	chr8:51021638-51101126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv26	chr8:51027781-51044881	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1027998	chr8:51032883-51084279	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv539607	chr8:51032883-51084279	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51032200-51046600	Weak transcription	Fetal Brain Male	brain
2	chr8:51037800-51046800	Weak transcription	Brain Germinal Matrix	brain
3	chr8:51038000-51047600	Weak transcription	Right Atrium	heart
4	chr8:51040600-51048400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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