Variant report

Variant	rs10957802
Chromosome Location	chr8:51088665-51088666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1000638	0.87[EUR][1000 genomes]
rs1000639	0.87[EUR][1000 genomes]
rs10096871	0.92[EUR][1000 genomes]
rs10504094	0.88[EUR][1000 genomes]
rs10504096	0.94[EUR][1000 genomes]
rs10957764	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12545107	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12545263	0.92[EUR][1000 genomes]
rs12548940	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251700	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13270234	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13271983	0.88[EUR][1000 genomes]
rs13280089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17686196	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1903311	0.92[EUR][1000 genomes]
rs2106156	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2157736	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34047312	0.94[EUR][1000 genomes]
rs34160877	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34431441	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34641787	0.92[EUR][1000 genomes]
rs34908792	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35093761	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35122483	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35418717	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35989044	0.87[EUR][1000 genomes]
rs4873405	0.94[EUR][1000 genomes]
rs4873406	0.92[EUR][1000 genomes]
rs4873407	0.94[EUR][1000 genomes]
rs56413317	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62516686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472947	0.92[EUR][1000 genomes]
rs6996646	0.89[EUR][1000 genomes]
rs7013995	0.92[EUR][1000 genomes]
rs721441	0.92[EUR][1000 genomes]
rs7820951	0.92[EUR][1000 genomes]
rs9298295	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1829361	chr8:51021638-51101126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1027984	chr8:51060895-51098808	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1022362	chr8:51071742-51093985	Enhancers ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51085600-51091200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:51087200-51090600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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