Variant report

Variant	rs13270234
Chromosome Location	chr8:51030877-51030878
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:51030711..51032424-chr8:51036929..51039858,2	MCF-7	breast:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1000638	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1000639	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10096871	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10098057	0.95[CEU][hapmap]
rs10504094	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10504096	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10504098	0.95[CEU][hapmap]
rs10957764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10957802	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10957813	0.91[CEU][hapmap]
rs10957814	0.95[CEU][hapmap]
rs11778998	0.91[CEU][hapmap]
rs11781074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11986160	0.95[CEU][hapmap]
rs11991940	0.91[CEU][hapmap]
rs12542067	0.95[CEU][hapmap]
rs12544986	0.90[CEU][hapmap]
rs12545107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12545263	0.95[EUR][1000 genomes]
rs12548940	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13251700	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13260265	0.95[CEU][hapmap]
rs13271983	0.94[EUR][1000 genomes]
rs13280089	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16914346	0.95[CEU][hapmap]
rs17686196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1903311	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2106156	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2157736	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34047312	0.97[EUR][1000 genomes]
rs34160877	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34431441	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34641787	0.98[EUR][1000 genomes]
rs34908792	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35093761	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35122483	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35418717	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35989044	0.93[EUR][1000 genomes]
rs4873128	0.95[CEU][hapmap]
rs4873129	0.95[CEU][hapmap]
rs4873405	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4873406	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs4873407	0.97[EUR][1000 genomes]
rs4873408	0.95[CEU][hapmap]
rs4873411	0.91[CEU][hapmap]
rs4873415	0.91[CEU][hapmap]
rs4873417	0.91[CEU][hapmap]
rs4873418	0.91[CEU][hapmap]
rs4873419	0.91[CEU][hapmap]
rs4873420	0.95[CEU][hapmap]
rs4873421	0.91[CEU][hapmap]
rs56413317	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62516686	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6472947	0.98[EUR][1000 genomes]
rs6986896	0.91[CEU][hapmap]
rs6988843	0.95[CEU][hapmap]
rs6996646	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6999722	0.89[CEU][hapmap]
rs6999870	0.91[CEU][hapmap]
rs7001686	0.91[CEU][hapmap]
rs7002235	0.95[CEU][hapmap]
rs7004088	0.91[CEU][hapmap]
rs7013995	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7016161	0.95[CEU][hapmap]
rs721441	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7820951	0.98[EUR][1000 genomes]
rs7825063	0.91[CEU][hapmap]
rs870754	0.95[CEU][hapmap]
rs884561	0.91[CEU][hapmap]
rs898520	0.95[CEU][hapmap]
rs9298278	0.95[CEU][hapmap]
rs9298279	0.95[CEU][hapmap]
rs987356	0.95[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv890871	chr8:50936174-51040022	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv890872	chr8:50946702-51032813	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv6184	chr8:50997525-51060432	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1034538	chr8:50998331-51032943	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv539605	chr8:50998331-51032943	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1029139	chr8:51003318-51032943	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv539606	chr8:51006600-51057478	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1023923	chr8:51020615-51039772	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1829361	chr8:51021638-51101126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv508509	chr8:51021837-51041388	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3361408	chr8:51023448-51039042	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1034545	chr8:51027285-51039772	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv26	chr8:51027781-51044881	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3481035	chr8:51029299-51034097	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3481036	chr8:51029299-51034097	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv1829293	chr8:51029371-51038255	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv1831308	chr8:51029371-51038255	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv1832317	chr8:51029371-51038255	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv1833149	chr8:51029371-51038255	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv1833241	chr8:51029371-51038255	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv437619	chr8:51029371-51039712	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3488684	chr8:51029899-51039197	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv611313	chr8:51029983-51035919	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv611314	chr8:51029983-51036683	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv611315	chr8:51029983-51037283	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv611316	chr8:51029983-51037674	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv611317	chr8:51029983-51038255	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv1008187	chr8:51030141-51039300	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv2475988	chr8:51030289-51038868	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv3488680	chr8:51030349-51039347	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
35	esv1830133	chr8:51030706-51038482	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv8339	chr8:51030782-51038885	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
37	esv6927	chr8:51030863-51038531	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51018400-51039600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:51030200-51031000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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