Variant report

Variant	rs13251700
Chromosome Location	chr8:51045025-51045026
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1000638	0.89[EUR][1000 genomes]
rs1000639	0.89[EUR][1000 genomes]
rs10096871	0.95[EUR][1000 genomes]
rs10504094	0.90[EUR][1000 genomes]
rs10504096	0.99[EUR][1000 genomes]
rs10957764	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10957802	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12545107	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12545263	0.98[EUR][1000 genomes]
rs12548940	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13270234	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13271983	0.90[EUR][1000 genomes]
rs13280089	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17686196	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1903311	0.95[EUR][1000 genomes]
rs2106156	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2157736	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34047312	0.99[EUR][1000 genomes]
rs34160877	0.90[ASN][1000 genomes]
rs34431441	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34641787	0.97[EUR][1000 genomes]
rs34908792	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35093761	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35122483	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35418717	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35989044	0.89[EUR][1000 genomes]
rs4873405	0.96[EUR][1000 genomes]
rs4873406	0.98[EUR][1000 genomes]
rs4873407	0.99[EUR][1000 genomes]
rs56413317	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62516686	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6472947	0.97[EUR][1000 genomes]
rs6996646	0.92[EUR][1000 genomes]
rs7013995	0.97[EUR][1000 genomes]
rs721441	0.95[EUR][1000 genomes]
rs7820951	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv6184	chr8:50997525-51060432	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv539606	chr8:51006600-51057478	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1829361	chr8:51021638-51101126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1027998	chr8:51032883-51084279	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv539607	chr8:51032883-51084279	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51032200-51046600	Weak transcription	Fetal Brain Male	brain
2	chr8:51037800-51046800	Weak transcription	Brain Germinal Matrix	brain
3	chr8:51038000-51047600	Weak transcription	Right Atrium	heart
4	chr8:51040600-51048400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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