Variant report

Variant	rs10504096
Chromosome Location	chr8:51047383-51047384
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 196 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:187)

rs_ID	r²[population]
rs1000638	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1000639	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10093604	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs10096871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10098057	0.95[CEU][hapmap];0.81[CHB][hapmap];0.90[ASN][1000 genomes]
rs10109835	1.00[JPT][hapmap]
rs10504094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10504098	0.95[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs10504099	0.81[JPT][hapmap]
rs10808817	0.81[JPT][hapmap]
rs10957764	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10957802	0.94[EUR][1000 genomes]
rs10957813	0.91[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs10957814	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs10957828	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs10957853	0.85[JPT][hapmap]
rs11775978	0.90[ASN][1000 genomes]
rs11778998	0.91[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs11780070	0.91[ASN][1000 genomes]
rs11781074	1.00[CEU][hapmap]
rs11781981	0.93[ASN][1000 genomes]
rs11784719	0.81[JPT][hapmap]
rs11786703	0.93[ASN][1000 genomes]
rs11986160	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs11989367	0.81[ASN][1000 genomes]
rs11991940	0.91[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs12056425	0.81[JPT][hapmap]
rs12056426	0.86[JPT][hapmap]
rs12542067	0.95[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs12544473	0.82[JPT][hapmap]
rs12544631	0.81[JPT][hapmap]
rs12544986	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12545107	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12545263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12680748	0.81[JPT][hapmap]
rs13248969	0.80[JPT][hapmap]
rs13251700	0.99[EUR][1000 genomes]
rs13251725	0.86[JPT][hapmap]
rs13252320	0.85[JPT][hapmap]
rs13253758	0.81[JPT][hapmap]
rs13260265	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs13270234	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs13271983	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13277538	0.91[ASN][1000 genomes]
rs13280089	0.94[EUR][1000 genomes]
rs13282956	0.86[JPT][hapmap]
rs13340639	0.83[JPT][hapmap]
rs1349317	0.81[JPT][hapmap]
rs1375945	0.81[JPT][hapmap]
rs1375948	0.81[JPT][hapmap]
rs1380789	0.81[JPT][hapmap]
rs1450127	0.81[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs1450132	0.81[JPT][hapmap]
rs149992	0.81[ASN][1000 genomes]
rs1597428	0.81[JPT][hapmap]
rs16914250	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16914346	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs16914376	0.91[ASN][1000 genomes]
rs16914459	0.93[ASN][1000 genomes]
rs17686196	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17758599	0.81[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs1824462	0.81[JPT][hapmap]
rs1868639	0.81[JPT][hapmap]
rs1901055	0.81[JPT][hapmap]
rs1901056	0.81[JPT][hapmap]
rs1903311	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1906070	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs203612	0.90[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs203616	0.90[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs203621	0.89[ASN][1000 genomes]
rs203623	0.88[ASN][1000 genomes]
rs203624	0.81[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs203626	0.81[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs203632	0.81[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs203908	0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs203925	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs203928	0.88[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs203932	0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs203933	0.87[ASN][1000 genomes]
rs203935	0.88[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs203936	0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs203937	0.90[ASN][1000 genomes]
rs203938	0.90[ASN][1000 genomes]
rs203939	0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs203940	0.90[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs203947	0.81[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs203949	0.90[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs203960	0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs2084590	0.81[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs2084591	0.84[ASN][1000 genomes]
rs2106156	1.00[CEU][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes]
rs2157736	1.00[CEU][hapmap];0.85[YRI][hapmap];0.90[EUR][1000 genomes]
rs2167157	0.81[JPT][hapmap]
rs2385812	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs34047312	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34160877	0.80[EUR][1000 genomes]
rs34641787	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34722367	0.91[ASN][1000 genomes]
rs34908792	0.95[EUR][1000 genomes]
rs34997857	0.93[ASN][1000 genomes]
rs35093761	0.86[EUR][1000 genomes]
rs35122483	0.90[EUR][1000 genomes]
rs35418717	0.93[EUR][1000 genomes]
rs35989044	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36006902	0.91[ASN][1000 genomes]
rs420489	0.90[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs4398931	0.81[JPT][hapmap]
rs4543555	0.81[JPT][hapmap]
rs4633068	0.81[JPT][hapmap]
rs4873126	0.93[ASN][1000 genomes]
rs4873127	0.93[ASN][1000 genomes]
rs4873128	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs4873129	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs4873131	0.84[ASN][1000 genomes]
rs4873132	0.81[CHB][hapmap];0.84[ASN][1000 genomes]
rs4873133	0.81[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs4873134	0.81[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs4873135	0.81[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs4873137	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs4873142	0.81[JPT][hapmap]
rs4873405	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873406	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873408	0.95[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs4873411	0.91[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs4873412	0.90[ASN][1000 genomes]
rs4873413	0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs4873414	0.91[ASN][1000 genomes]
rs4873415	0.91[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs4873416	0.91[ASN][1000 genomes]
rs4873417	0.91[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs4873418	0.91[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs4873419	0.91[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs4873420	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs4873421	0.91[CEU][hapmap];0.91[ASN][1000 genomes]
rs4873426	0.84[ASN][1000 genomes]
rs4873427	0.84[ASN][1000 genomes]
rs4873428	0.81[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs4873431	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs4873433	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs4873442	0.81[JPT][hapmap]
rs4873447	0.81[JPT][hapmap]
rs55889053	0.84[ASN][1000 genomes]
rs56007637	0.93[ASN][1000 genomes]
rs56413317	0.93[EUR][1000 genomes]
rs56725	0.90[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs62515375	0.87[ASN][1000 genomes]
rs62516672	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62516685	0.91[ASN][1000 genomes]
rs62516686	0.94[EUR][1000 genomes]
rs62516687	0.91[ASN][1000 genomes]
rs6472947	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6981805	0.81[JPT][hapmap]
rs6983498	0.81[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs6986896	0.91[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs6988843	0.95[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs6991753	0.81[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs6996646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6999722	0.89[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs6999870	0.91[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs7001686	0.91[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs7002235	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs7004088	0.91[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs7010037	0.91[ASN][1000 genomes]
rs7013247	0.80[JPT][hapmap]
rs7013995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7016161	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs7017642	0.81[JPT][hapmap]
rs7018082	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs721441	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7386487	0.88[ASN][1000 genomes]
rs7817040	0.84[ASN][1000 genomes]
rs7817638	0.84[ASN][1000 genomes]
rs7820951	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7821189	0.81[JPT][hapmap]
rs7824938	0.88[ASN][1000 genomes]
rs7825053	0.88[ASN][1000 genomes]
rs7825063	0.91[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs7835849	0.84[ASN][1000 genomes]
rs870754	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs884561	0.91[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs898520	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs9298278	0.95[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs9298279	0.95[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs968944	0.81[JPT][hapmap]
rs968947	0.81[JPT][hapmap]
rs987356	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv6184	chr8:50997525-51060432	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv539606	chr8:51006600-51057478	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1829361	chr8:51021638-51101126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1027998	chr8:51032883-51084279	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv539607	chr8:51032883-51084279	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51038000-51047600	Weak transcription	Right Atrium	heart
2	chr8:51040600-51048400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:51046200-51048200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:51046600-51047600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:51046600-51047600	Enhancers	Fetal Brain Female	brain
6	chr8:51046600-51047800	Enhancers	Fetal Brain Male	brain
7	chr8:51046600-51048000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:51046800-51047400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:51047000-51047400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:51047000-51047800	Enhancers	Fetal Lung	lung
11	chr8:51047200-51047400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:51047200-51047800	Enhancers	Brain Substantia Nigra	brain
13	chr8:51047200-51051800	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links