Variant report

Variant	rs203621
Chromosome Location	chr8:51025630-51025631
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs1000638	0.85[ASN][1000 genomes]
rs1000639	0.85[ASN][1000 genomes]
rs10096871	0.87[ASN][1000 genomes]
rs10098057	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10504094	0.85[ASN][1000 genomes]
rs10504096	0.89[ASN][1000 genomes]
rs10504098	0.92[ASN][1000 genomes]
rs10957813	0.92[ASN][1000 genomes]
rs10957814	0.92[ASN][1000 genomes]
rs11775978	0.91[ASN][1000 genomes]
rs11778998	0.90[ASN][1000 genomes]
rs11780070	0.92[ASN][1000 genomes]
rs11781981	0.90[ASN][1000 genomes]
rs11786703	0.90[ASN][1000 genomes]
rs11989367	0.87[ASN][1000 genomes]
rs11991940	0.92[ASN][1000 genomes]
rs12542067	0.90[ASN][1000 genomes]
rs12545263	0.89[ASN][1000 genomes]
rs13271983	0.87[ASN][1000 genomes]
rs13277538	0.92[ASN][1000 genomes]
rs1450127	0.90[ASN][1000 genomes]
rs149992	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs149994	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16914376	0.92[ASN][1000 genomes]
rs16914459	0.90[ASN][1000 genomes]
rs17758599	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1903311	0.89[ASN][1000 genomes]
rs203612	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs203616	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs203623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs203624	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs203626	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs203629	0.81[EUR][1000 genomes]
rs203632	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs203908	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs203928	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs203930	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs203932	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs203933	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs203935	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs203936	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs203937	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs203938	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs203939	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs203940	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs203942	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs203945	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs203947	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs203949	0.90[ASN][1000 genomes]
rs203951	0.91[EUR][1000 genomes]
rs203960	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2084590	0.90[ASN][1000 genomes]
rs2084591	0.90[ASN][1000 genomes]
rs34047312	0.89[ASN][1000 genomes]
rs34641787	0.89[ASN][1000 genomes]
rs34722367	0.92[ASN][1000 genomes]
rs34997857	0.90[ASN][1000 genomes]
rs35989044	0.85[ASN][1000 genomes]
rs36006902	0.92[ASN][1000 genomes]
rs420489	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4448283	0.84[ASN][1000 genomes]
rs4873126	0.90[ASN][1000 genomes]
rs4873127	0.90[ASN][1000 genomes]
rs4873128	0.92[ASN][1000 genomes]
rs4873129	0.92[ASN][1000 genomes]
rs4873131	0.90[ASN][1000 genomes]
rs4873132	0.90[ASN][1000 genomes]
rs4873133	0.90[ASN][1000 genomes]
rs4873134	0.90[ASN][1000 genomes]
rs4873135	0.90[ASN][1000 genomes]
rs4873405	0.91[ASN][1000 genomes]
rs4873406	0.89[ASN][1000 genomes]
rs4873407	0.89[ASN][1000 genomes]
rs4873408	0.96[ASN][1000 genomes]
rs4873412	0.91[ASN][1000 genomes]
rs4873413	0.92[ASN][1000 genomes]
rs4873414	0.92[ASN][1000 genomes]
rs4873415	0.90[ASN][1000 genomes]
rs4873416	0.92[ASN][1000 genomes]
rs4873417	0.95[ASN][1000 genomes]
rs4873418	0.92[ASN][1000 genomes]
rs4873419	0.92[ASN][1000 genomes]
rs4873420	0.92[ASN][1000 genomes]
rs4873421	0.92[ASN][1000 genomes]
rs4873426	0.90[ASN][1000 genomes]
rs4873427	0.90[ASN][1000 genomes]
rs4873428	0.90[ASN][1000 genomes]
rs56007637	0.90[ASN][1000 genomes]
rs56725	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62515375	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62516672	0.91[ASN][1000 genomes]
rs62516685	0.92[ASN][1000 genomes]
rs62516687	0.92[ASN][1000 genomes]
rs6472947	0.94[ASN][1000 genomes]
rs6983498	0.90[ASN][1000 genomes]
rs6986896	0.95[ASN][1000 genomes]
rs6988843	0.96[ASN][1000 genomes]
rs6991753	0.95[ASN][1000 genomes]
rs6996646	0.87[ASN][1000 genomes]
rs7001686	0.95[ASN][1000 genomes]
rs7002235	0.92[ASN][1000 genomes]
rs7010037	0.92[ASN][1000 genomes]
rs7013995	0.86[ASN][1000 genomes]
rs7016161	0.92[ASN][1000 genomes]
rs7018082	0.84[ASN][1000 genomes]
rs721441	0.87[ASN][1000 genomes]
rs7386487	0.95[ASN][1000 genomes]
rs7817040	0.90[ASN][1000 genomes]
rs7817638	0.90[ASN][1000 genomes]
rs7820951	0.87[ASN][1000 genomes]
rs7824938	0.90[ASN][1000 genomes]
rs7825053	0.90[ASN][1000 genomes]
rs7825063	0.92[ASN][1000 genomes]
rs7835849	0.90[ASN][1000 genomes]
rs870754	0.90[ASN][1000 genomes]
rs884561	0.92[ASN][1000 genomes]
rs898520	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv890871	chr8:50936174-51040022	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv890872	chr8:50946702-51032813	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv6184	chr8:50997525-51060432	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1034538	chr8:50998331-51032943	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv539605	chr8:50998331-51032943	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1029139	chr8:51003318-51032943	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv539606	chr8:51006600-51057478	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1023923	chr8:51020615-51039772	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv1829361	chr8:51021638-51101126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv508509	chr8:51021837-51041388	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3361408	chr8:51023448-51039042	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51018400-51039600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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