Variant report

Variant	rs203939
Chromosome Location	chr8:50986126-50986127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 195 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:188)

rs_ID	r²[population]
rs1000638	0.81[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs1000639	0.81[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs10093604	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10094935	0.93[JPT][hapmap]
rs10095985	0.87[JPT][hapmap]
rs10096871	0.81[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs10098057	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs10109835	0.88[JPT][hapmap]
rs10504094	0.81[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs10504096	0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs10504098	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10504099	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs10808817	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs10957813	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10957814	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10957828	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10957853	0.92[JPT][hapmap];1.00[YRI][hapmap]
rs11775978	0.90[ASN][1000 genomes]
rs11778998	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11780070	0.91[ASN][1000 genomes]
rs11781981	0.89[ASN][1000 genomes]
rs11786703	0.89[ASN][1000 genomes]
rs11986160	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11989367	0.85[ASN][1000 genomes]
rs11991940	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12056425	0.93[JPT][hapmap];0.92[YRI][hapmap]
rs12056426	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs12542067	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs12544631	0.93[JPT][hapmap]
rs12544986	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12545263	0.87[ASN][1000 genomes]
rs12545915	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs12677964	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs12679356	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs12680748	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs13249415	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs13251587	0.93[JPT][hapmap]
rs13252320	0.92[JPT][hapmap];1.00[YRI][hapmap]
rs13260265	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs13271983	0.89[ASN][1000 genomes]
rs13275607	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs13277538	0.91[ASN][1000 genomes]
rs13282956	0.93[JPT][hapmap];0.83[YRI][hapmap]
rs13340639	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1349316	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs1349317	0.93[JPT][hapmap]
rs1375948	0.93[JPT][hapmap]
rs1380789	0.93[JPT][hapmap]
rs1380790	0.87[JPT][hapmap]
rs1380791	0.93[JPT][hapmap]
rs1380792	0.93[JPT][hapmap]
rs1450127	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs149992	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs149994	0.83[AMR][1000 genomes]
rs1597426	0.93[JPT][hapmap]
rs1597428	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs1597430	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs1597431	1.00[YRI][hapmap]
rs16914250	0.86[JPT][hapmap]
rs16914346	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs16914376	0.91[ASN][1000 genomes]
rs16914459	0.89[ASN][1000 genomes]
rs17758599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1824462	0.93[JPT][hapmap]
rs1901055	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs1903311	0.81[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs1906070	0.86[JPT][hapmap]
rs203612	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs203616	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs203619	0.86[YRI][hapmap]
rs203621	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs203623	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs203624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs203626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs203629	0.80[EUR][1000 genomes]
rs203632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs203908	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs203925	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs203928	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs203930	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs203932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203933	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203935	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs203936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203937	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs203938	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs203940	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs203942	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs203945	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs203947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs203949	0.95[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs203951	0.97[EUR][1000 genomes]
rs203960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2084590	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs2084591	0.89[ASN][1000 genomes]
rs2385812	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34047312	0.87[ASN][1000 genomes]
rs34641787	0.87[ASN][1000 genomes]
rs34722367	0.91[ASN][1000 genomes]
rs34997857	0.89[ASN][1000 genomes]
rs35989044	0.91[ASN][1000 genomes]
rs36006902	0.91[ASN][1000 genomes]
rs420489	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4330704	0.92[JPT][hapmap];1.00[YRI][hapmap]
rs4398931	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs4448283	0.83[ASN][1000 genomes]
rs4448284	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs4543555	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs4577969	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs4633068	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs4873126	0.89[ASN][1000 genomes]
rs4873127	0.89[ASN][1000 genomes]
rs4873128	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4873129	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4873131	0.89[ASN][1000 genomes]
rs4873132	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs4873133	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs4873134	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs4873135	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs4873137	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4873405	0.91[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs4873406	0.81[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs4873407	0.87[ASN][1000 genomes]
rs4873408	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[ASN][1000 genomes]
rs4873411	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4873412	0.90[ASN][1000 genomes]
rs4873413	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4873414	0.91[ASN][1000 genomes]
rs4873415	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4873416	0.91[ASN][1000 genomes]
rs4873417	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs4873418	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4873419	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4873420	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4873421	0.91[ASN][1000 genomes]
rs4873426	0.89[ASN][1000 genomes]
rs4873427	0.89[ASN][1000 genomes]
rs4873428	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs4873431	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4873433	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4873442	0.93[JPT][hapmap]
rs4873447	0.93[JPT][hapmap]
rs56007637	0.89[ASN][1000 genomes]
rs56725	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62515375	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62516672	0.90[ASN][1000 genomes]
rs62516685	0.91[ASN][1000 genomes]
rs62516687	0.91[ASN][1000 genomes]
rs6472947	0.92[ASN][1000 genomes]
rs6981805	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs6983498	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs6986896	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs6988843	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6991753	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs6996646	0.81[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs6999627	0.93[JPT][hapmap]
rs6999722	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs6999870	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7001686	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs7002235	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7004088	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7005973	0.86[YRI][hapmap]
rs7010037	0.91[ASN][1000 genomes]
rs7013247	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs7013995	0.81[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs7016161	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7017642	0.93[JPT][hapmap]
rs7018082	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs721441	0.81[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs7386487	0.94[ASN][1000 genomes]
rs7464491	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs7817040	0.89[ASN][1000 genomes]
rs7817638	0.89[ASN][1000 genomes]
rs7820951	0.89[ASN][1000 genomes]
rs7821189	0.93[JPT][hapmap]
rs7824938	0.89[ASN][1000 genomes]
rs7825053	0.89[ASN][1000 genomes]
rs7825063	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs7835849	0.89[ASN][1000 genomes]
rs870754	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs884561	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs898520	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9298278	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9298279	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs968944	0.93[JPT][hapmap]
rs968945	0.93[JPT][hapmap]
rs968947	0.93[JPT][hapmap];1.00[YRI][hapmap]
rs987356	0.90[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv611312	chr8:50930075-51011122	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv890871	chr8:50936174-51040022	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv890872	chr8:50946702-51032813	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50981800-50986800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:50982600-50987200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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