Variant report

Variant	rs4873421
Chromosome Location	chr8:51114592-51114593
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 178 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs1000638	0.95[CEU][hapmap];0.87[ASN][1000 genomes]
rs1000639	0.91[CEU][hapmap];0.87[ASN][1000 genomes]
rs10093604	0.82[CEU][hapmap]
rs10095985	0.82[CEU][hapmap]
rs10096871	0.95[CEU][hapmap];0.90[ASN][1000 genomes]
rs10098057	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10504094	0.91[CEU][hapmap];0.87[ASN][1000 genomes]
rs10504096	0.91[CEU][hapmap];0.91[ASN][1000 genomes]
rs10504098	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504099	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs10808817	0.86[CEU][hapmap]
rs10957764	0.95[CEU][hapmap]
rs10957813	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957814	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957828	0.86[CEU][hapmap]
rs10957853	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs11775978	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11778998	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11780070	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11781074	0.95[CEU][hapmap]
rs11781981	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11786703	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11986160	1.00[CEU][hapmap]
rs11989367	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11991940	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12056425	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs12056426	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs12542067	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12544986	1.00[CEU][hapmap]
rs12545107	0.95[CEU][hapmap]
rs12545263	0.91[ASN][1000 genomes]
rs12545365	0.83[EUR][1000 genomes]
rs12545915	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs12677522	0.83[EUR][1000 genomes]
rs12677964	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs12679317	0.83[EUR][1000 genomes]
rs12679356	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs13249415	0.86[CEU][hapmap]
rs13252320	0.84[CEU][hapmap]
rs13260265	1.00[CEU][hapmap]
rs13270234	0.91[CEU][hapmap]
rs13271983	0.90[ASN][1000 genomes]
rs13275607	0.86[CEU][hapmap]
rs13277538	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13282956	0.86[CEU][hapmap]
rs13340639	0.85[CEU][hapmap]
rs1450127	0.85[CEU][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486471	0.82[CEU][hapmap]
rs149992	0.85[ASN][1000 genomes]
rs1597428	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs1597429	0.83[EUR][1000 genomes]
rs1597430	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs1597431	0.83[EUR][1000 genomes]
rs16914346	1.00[CEU][hapmap]
rs16914376	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914459	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17686196	0.95[CEU][hapmap]
rs17758599	0.90[ASN][1000 genomes]
rs1901050	0.83[EUR][1000 genomes]
rs1901055	0.86[CEU][hapmap]
rs1903311	0.95[CEU][hapmap];0.91[ASN][1000 genomes]
rs203612	0.96[ASN][1000 genomes]
rs203616	0.96[ASN][1000 genomes]
rs203621	0.92[ASN][1000 genomes]
rs203623	0.91[ASN][1000 genomes]
rs203624	0.95[ASN][1000 genomes]
rs203626	0.91[ASN][1000 genomes]
rs203632	0.94[ASN][1000 genomes]
rs203908	0.94[ASN][1000 genomes]
rs203928	0.92[ASN][1000 genomes]
rs203932	0.91[ASN][1000 genomes]
rs203933	0.91[ASN][1000 genomes]
rs203935	0.93[ASN][1000 genomes]
rs203936	0.91[ASN][1000 genomes]
rs203937	0.93[ASN][1000 genomes]
rs203938	0.93[ASN][1000 genomes]
rs203939	0.91[ASN][1000 genomes]
rs203940	0.93[ASN][1000 genomes]
rs203947	0.90[ASN][1000 genomes]
rs203949	0.87[ASN][1000 genomes]
rs203960	0.91[ASN][1000 genomes]
rs2084589	0.81[EUR][1000 genomes]
rs2084590	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2084591	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2106156	0.95[CEU][hapmap]
rs2157736	0.91[CEU][hapmap]
rs2385812	0.85[CEU][hapmap]
rs34047312	0.91[ASN][1000 genomes]
rs34217744	0.81[AMR][1000 genomes]
rs34641787	0.91[ASN][1000 genomes]
rs34722367	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34788367	0.86[EUR][1000 genomes]
rs34908431	0.86[EUR][1000 genomes]
rs34997857	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35989044	0.87[ASN][1000 genomes]
rs36006902	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs420489	0.96[ASN][1000 genomes]
rs4330704	0.86[CEU][hapmap]
rs4398931	0.86[CEU][hapmap]
rs4448283	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4448284	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs4543555	0.86[CEU][hapmap]
rs4577969	0.86[CEU][hapmap]
rs4633068	0.86[CEU][hapmap]
rs4873126	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873127	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873128	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873129	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873131	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873132	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873133	0.86[CEU][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873134	0.86[CEU][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873135	0.85[CEU][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873137	0.86[CEU][hapmap]
rs4873405	0.91[CEU][hapmap];0.88[ASN][1000 genomes]
rs4873406	0.91[CEU][hapmap];0.91[ASN][1000 genomes]
rs4873407	0.91[ASN][1000 genomes]
rs4873408	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4873411	1.00[CEU][hapmap]
rs4873412	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4873413	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873414	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873415	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873416	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873417	1.00[CEU][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4873418	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873419	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873420	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873426	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873427	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873428	0.85[CEU][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873431	0.85[CEU][hapmap]
rs4873433	0.85[CEU][hapmap]
rs4873438	0.81[AMR][1000 genomes]
rs4873439	0.82[AMR][1000 genomes]
rs56007637	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56725	0.96[ASN][1000 genomes]
rs62515375	0.91[ASN][1000 genomes]
rs62516672	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62516685	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62516687	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472947	0.91[ASN][1000 genomes]
rs6981805	0.86[CEU][hapmap]
rs6983498	0.85[CEU][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6986896	1.00[CEU][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6988843	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6991753	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6996646	0.91[CEU][hapmap];0.90[ASN][1000 genomes]
rs6999722	1.00[CEU][hapmap]
rs6999870	1.00[CEU][hapmap]
rs7001686	1.00[CEU][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7002235	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7004088	1.00[CEU][hapmap]
rs7010037	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013995	0.91[CEU][hapmap];0.88[ASN][1000 genomes]
rs7016161	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7018082	0.86[CEU][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs721441	0.95[CEU][hapmap];0.90[ASN][1000 genomes]
rs7386487	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7464491	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs7817040	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7817638	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7820951	0.90[ASN][1000 genomes]
rs7824938	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7825053	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7825063	1.00[CEU][hapmap];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7835849	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs870754	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs884561	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898520	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298278	1.00[CEU][hapmap]
rs9298279	1.00[CEU][hapmap]
rs9643720	0.86[CEU][hapmap]
rs987356	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51113400-51114600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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