Variant report

Variant	rs35989044
Chromosome Location	chr8:50985878-50985879
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs1000638	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1000639	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096871	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10098057	0.86[ASN][1000 genomes]
rs10504094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504096	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10504098	0.87[ASN][1000 genomes]
rs10957764	1.00[EUR][1000 genomes]
rs10957802	0.87[EUR][1000 genomes]
rs10957813	0.87[ASN][1000 genomes]
rs10957814	0.87[ASN][1000 genomes]
rs11775978	0.86[ASN][1000 genomes]
rs11778998	0.85[ASN][1000 genomes]
rs11780070	0.87[ASN][1000 genomes]
rs11781981	0.89[ASN][1000 genomes]
rs11786703	0.89[ASN][1000 genomes]
rs11991940	0.87[ASN][1000 genomes]
rs12545107	1.00[EUR][1000 genomes]
rs12545263	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13251700	0.89[EUR][1000 genomes]
rs13270234	0.93[EUR][1000 genomes]
rs13271983	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13277538	0.87[ASN][1000 genomes]
rs13280089	0.87[EUR][1000 genomes]
rs1450127	0.80[ASN][1000 genomes]
rs16914250	0.88[ASN][1000 genomes]
rs16914376	0.87[ASN][1000 genomes]
rs16914459	0.89[ASN][1000 genomes]
rs17686196	0.99[EUR][1000 genomes]
rs17758599	0.90[ASN][1000 genomes]
rs1903311	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1906070	0.86[ASN][1000 genomes]
rs203612	0.91[ASN][1000 genomes]
rs203616	0.91[ASN][1000 genomes]
rs203621	0.85[ASN][1000 genomes]
rs203623	0.84[ASN][1000 genomes]
rs203624	0.87[ASN][1000 genomes]
rs203626	0.86[ASN][1000 genomes]
rs203632	0.89[ASN][1000 genomes]
rs203908	0.86[ASN][1000 genomes]
rs203928	0.92[ASN][1000 genomes]
rs203932	0.91[ASN][1000 genomes]
rs203933	0.91[ASN][1000 genomes]
rs203935	0.93[ASN][1000 genomes]
rs203936	0.91[ASN][1000 genomes]
rs203937	0.93[ASN][1000 genomes]
rs203938	0.93[ASN][1000 genomes]
rs203939	0.91[ASN][1000 genomes]
rs203940	0.93[ASN][1000 genomes]
rs203947	0.90[ASN][1000 genomes]
rs203949	0.92[ASN][1000 genomes]
rs203960	0.91[ASN][1000 genomes]
rs2084590	0.80[ASN][1000 genomes]
rs2084591	0.80[ASN][1000 genomes]
rs2106156	1.00[EUR][1000 genomes]
rs2157736	1.00[EUR][1000 genomes]
rs34047312	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34641787	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34722367	0.87[ASN][1000 genomes]
rs34908792	0.95[EUR][1000 genomes]
rs34997857	0.89[ASN][1000 genomes]
rs35093761	0.96[EUR][1000 genomes]
rs35122483	1.00[EUR][1000 genomes]
rs35418717	0.86[EUR][1000 genomes]
rs36006902	0.87[ASN][1000 genomes]
rs420489	0.91[ASN][1000 genomes]
rs4873126	0.89[ASN][1000 genomes]
rs4873127	0.89[ASN][1000 genomes]
rs4873128	0.87[ASN][1000 genomes]
rs4873129	0.87[ASN][1000 genomes]
rs4873131	0.80[ASN][1000 genomes]
rs4873132	0.80[ASN][1000 genomes]
rs4873133	0.80[ASN][1000 genomes]
rs4873134	0.80[ASN][1000 genomes]
rs4873135	0.80[ASN][1000 genomes]
rs4873405	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4873406	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4873407	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4873408	0.86[ASN][1000 genomes]
rs4873412	0.86[ASN][1000 genomes]
rs4873413	0.87[ASN][1000 genomes]
rs4873414	0.87[ASN][1000 genomes]
rs4873415	0.89[ASN][1000 genomes]
rs4873416	0.87[ASN][1000 genomes]
rs4873417	0.85[ASN][1000 genomes]
rs4873418	0.87[ASN][1000 genomes]
rs4873419	0.87[ASN][1000 genomes]
rs4873420	0.87[ASN][1000 genomes]
rs4873421	0.87[ASN][1000 genomes]
rs4873426	0.80[ASN][1000 genomes]
rs4873427	0.80[ASN][1000 genomes]
rs4873428	0.80[ASN][1000 genomes]
rs55889053	0.88[ASN][1000 genomes]
rs56007637	0.90[ASN][1000 genomes]
rs56413317	0.86[EUR][1000 genomes]
rs56725	0.91[ASN][1000 genomes]
rs62515375	0.91[ASN][1000 genomes]
rs62516672	0.91[ASN][1000 genomes]
rs62516685	0.87[ASN][1000 genomes]
rs62516686	0.87[EUR][1000 genomes]
rs62516687	0.87[ASN][1000 genomes]
rs6472947	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6983498	0.80[ASN][1000 genomes]
rs6986896	0.85[ASN][1000 genomes]
rs6988843	0.86[ASN][1000 genomes]
rs6991753	0.85[ASN][1000 genomes]
rs6996646	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7001686	0.85[ASN][1000 genomes]
rs7002235	0.87[ASN][1000 genomes]
rs7010037	0.87[ASN][1000 genomes]
rs7013995	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7016161	0.87[ASN][1000 genomes]
rs721441	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7386487	0.85[ASN][1000 genomes]
rs7817040	0.80[ASN][1000 genomes]
rs7817638	0.80[ASN][1000 genomes]
rs7820951	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7824938	0.84[ASN][1000 genomes]
rs7825053	0.84[ASN][1000 genomes]
rs7825063	0.82[ASN][1000 genomes]
rs7835849	0.80[ASN][1000 genomes]
rs870754	0.89[ASN][1000 genomes]
rs884561	0.87[ASN][1000 genomes]
rs898520	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv611312	chr8:50930075-51011122	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv890871	chr8:50936174-51040022	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv890872	chr8:50946702-51032813	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50981800-50986800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:50982600-50987200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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