Variant report

Variant	rs55889053
Chromosome Location	chr8:50988366-50988367
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1000638	0.88[ASN][1000 genomes]
rs1000639	0.88[ASN][1000 genomes]
rs10096871	0.85[ASN][1000 genomes]
rs10504094	0.88[ASN][1000 genomes]
rs10504096	0.84[ASN][1000 genomes]
rs11986031	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11987017	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11994226	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12545263	0.84[ASN][1000 genomes]
rs13271983	0.85[ASN][1000 genomes]
rs1484809	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1484810	0.84[ASN][1000 genomes]
rs1484811	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16914220	0.85[ASN][1000 genomes]
rs16914250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16914299	0.83[AMR][1000 genomes]
rs16914318	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16914321	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16914423	0.87[AMR][1000 genomes]
rs1903311	0.84[ASN][1000 genomes]
rs1906070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1993680	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs203928	0.81[ASN][1000 genomes]
rs203935	0.82[ASN][1000 genomes]
rs203937	0.82[ASN][1000 genomes]
rs203938	0.82[ASN][1000 genomes]
rs203940	0.82[ASN][1000 genomes]
rs203949	0.81[ASN][1000 genomes]
rs34047312	0.84[ASN][1000 genomes]
rs34641787	0.84[ASN][1000 genomes]
rs35989044	0.88[ASN][1000 genomes]
rs4873405	0.81[ASN][1000 genomes]
rs4873406	0.84[ASN][1000 genomes]
rs4873407	0.84[ASN][1000 genomes]
rs58489421	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59046807	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6996646	0.85[ASN][1000 genomes]
rs7013995	0.81[ASN][1000 genomes]
rs721441	0.85[ASN][1000 genomes]
rs73676252	0.87[AMR][1000 genomes]
rs7816568	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7820951	0.85[ASN][1000 genomes]
rs7839007	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv611312	chr8:50930075-51011122	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv890871	chr8:50936174-51040022	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv890872	chr8:50946702-51032813	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50987600-50991000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:50988200-50989000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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