Variant report

Variant	rs13280089
Chromosome Location	chr8:51096883-51096884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1000638	0.87[EUR][1000 genomes]
rs1000639	0.87[EUR][1000 genomes]
rs10096871	0.92[EUR][1000 genomes]
rs10504094	0.88[EUR][1000 genomes]
rs10504096	0.94[EUR][1000 genomes]
rs10957764	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10957802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12545107	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12545263	0.92[EUR][1000 genomes]
rs12548940	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13251700	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13270234	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13271983	0.88[EUR][1000 genomes]
rs17686196	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1903311	0.92[EUR][1000 genomes]
rs2106156	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2157736	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34047312	0.94[EUR][1000 genomes]
rs34160877	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34431441	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34641787	0.92[EUR][1000 genomes]
rs34908792	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35093761	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35122483	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35418717	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35989044	0.87[EUR][1000 genomes]
rs4873405	0.94[EUR][1000 genomes]
rs4873406	0.92[EUR][1000 genomes]
rs4873407	0.94[EUR][1000 genomes]
rs56413317	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62516686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472947	0.92[EUR][1000 genomes]
rs6996646	0.89[EUR][1000 genomes]
rs7013995	0.92[EUR][1000 genomes]
rs721441	0.92[EUR][1000 genomes]
rs7820951	0.92[EUR][1000 genomes]
rs9298295	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759613	chr8:50873293-51137995	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758621	chr8:50886593-51137995	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1829361	chr8:51021638-51101126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1027984	chr8:51060895-51098808	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51096200-51097000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:51096200-51097400	Enhancers	NH-A	brain
3	chr8:51096200-51097600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:51096200-51100600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:51096200-51101000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:51096200-51101200	Weak transcription	NHDF-Ad	bronchial
7	chr8:51096600-51098000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:51096600-51098200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:51096600-51100200	Weak transcription	HMEC	breast
10	chr8:51096800-51097800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:51096800-51100800	Weak transcription	Osteobl	bone
12	chr8:51096800-51101000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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