Variant report

Variant	rs9298295
Chromosome Location	chr8:51170362-51170363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10092399	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10093604	0.83[CEU][hapmap]
rs10094935	1.00[CEU][hapmap];0.97[TSI][hapmap];1.00[EUR][1000 genomes]
rs10108468	0.84[CEU][hapmap];0.87[TSI][hapmap];1.00[EUR][1000 genomes]
rs10109835	0.94[CEU][hapmap]
rs10113812	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10504099	0.91[EUR][1000 genomes]
rs10957802	0.83[ASN][1000 genomes]
rs10957853	0.93[EUR][1000 genomes]
rs12056425	0.92[EUR][1000 genomes]
rs12056426	0.92[EUR][1000 genomes]
rs12541382	0.82[JPT][hapmap]
rs12544631	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12545365	0.93[EUR][1000 genomes]
rs12545915	0.94[TSI][hapmap];0.93[EUR][1000 genomes]
rs12548940	0.88[CEU][hapmap];0.93[GIH][hapmap];0.83[ASN][1000 genomes]
rs12677522	0.93[EUR][1000 genomes]
rs12677964	0.92[EUR][1000 genomes]
rs12679317	0.93[EUR][1000 genomes]
rs12679356	0.83[CEU][hapmap];0.93[EUR][1000 genomes]
rs13251587	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs13280089	0.83[ASN][1000 genomes]
rs1349316	0.81[CEU][hapmap]
rs1349317	1.00[CEU][hapmap]
rs1450127	0.83[EUR][1000 genomes]
rs1597426	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1597428	0.92[EUR][1000 genomes]
rs1597429	0.93[EUR][1000 genomes]
rs1597430	0.94[TSI][hapmap];0.93[EUR][1000 genomes]
rs1597431	0.93[EUR][1000 genomes]
rs1901050	0.93[EUR][1000 genomes]
rs2084590	0.82[EUR][1000 genomes]
rs2084591	0.82[EUR][1000 genomes]
rs28510664	0.97[EUR][1000 genomes]
rs34217744	0.95[EUR][1000 genomes]
rs34431441	0.83[ASN][1000 genomes]
rs34788367	0.88[EUR][1000 genomes]
rs34908431	0.88[EUR][1000 genomes]
rs35418717	0.83[ASN][1000 genomes]
rs35516514	0.95[EUR][1000 genomes]
rs35857674	0.99[EUR][1000 genomes]
rs3922033	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4448283	0.82[EUR][1000 genomes]
rs4448284	0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs4873131	0.81[EUR][1000 genomes]
rs4873132	0.82[EUR][1000 genomes]
rs4873133	0.82[EUR][1000 genomes]
rs4873134	0.82[EUR][1000 genomes]
rs4873135	0.82[EUR][1000 genomes]
rs4873141	1.00[CEU][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs4873426	0.81[EUR][1000 genomes]
rs4873427	0.82[EUR][1000 genomes]
rs4873428	0.82[EUR][1000 genomes]
rs4873438	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs4873439	1.00[CEU][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.99[EUR][1000 genomes]
rs4873442	1.00[CEU][hapmap]
rs4873443	1.00[CEU][hapmap]
rs56413317	0.83[ASN][1000 genomes]
rs62516686	0.83[ASN][1000 genomes]
rs6983498	0.82[EUR][1000 genomes]
rs6999627	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7000325	0.99[EUR][1000 genomes]
rs7017642	1.00[CEU][hapmap]
rs7018082	0.80[EUR][1000 genomes]
rs7464491	0.92[EUR][1000 genomes]
rs7817040	0.81[EUR][1000 genomes]
rs7817638	0.81[EUR][1000 genomes]
rs7821189	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7835849	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv524203	chr8:51161232-51188675	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9298295	SNTG1	cis	cerebellum	SCAN
rs9298295	RNGTT	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51170000-51170800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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