Variant report

Variant	rs7000325
Chromosome Location	chr8:51158223-51158224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10094935	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108468	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504099	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10957853	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12056425	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12056426	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12544631	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12545365	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12545915	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12677522	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12677964	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12679317	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12679356	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12681918	0.86[ASN][1000 genomes]
rs13251587	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1375947	0.86[ASN][1000 genomes]
rs1450127	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1450135	0.86[ASN][1000 genomes]
rs1597427	0.86[ASN][1000 genomes]
rs1597428	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1597429	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1597430	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1597431	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1868638	0.86[ASN][1000 genomes]
rs1868639	0.86[ASN][1000 genomes]
rs1901050	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2084590	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2084591	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2167157	0.86[ASN][1000 genomes]
rs2840054	0.88[ASN][1000 genomes]
rs28510664	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34217744	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34788367	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34908431	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35516514	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35857674	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3919764	0.84[ASN][1000 genomes]
rs4448283	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4448284	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4618709	0.86[ASN][1000 genomes]
rs4873131	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4873132	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4873133	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4873134	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4873135	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4873141	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873426	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4873427	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4873428	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4873438	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873439	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4873451	0.86[ASN][1000 genomes]
rs4873452	0.86[ASN][1000 genomes]
rs62515888	0.88[ASN][1000 genomes]
rs6983498	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6989084	0.86[ASN][1000 genomes]
rs6990514	0.86[ASN][1000 genomes]
rs7018082	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7464491	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7817040	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7817638	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7821189	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822367	0.86[ASN][1000 genomes]
rs7834452	0.86[ASN][1000 genomes]
rs7835144	0.82[ASN][1000 genomes]
rs7835849	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9298295	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51156800-51161400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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