Variant report

Variant	rs1868638
Chromosome Location	chr8:51207029-51207030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10086867	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10094935	0.86[ASN][1000 genomes]
rs10108468	0.86[ASN][1000 genomes]
rs10504099	0.87[ASN][1000 genomes]
rs10957853	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1160764	0.90[ASN][1000 genomes]
rs1160795	0.90[ASN][1000 genomes]
rs11784464	0.90[ASN][1000 genomes]
rs11784719	1.00[CEU][hapmap]
rs12056425	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12056426	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12541382	0.88[CEU][hapmap];0.82[CHB][hapmap]
rs12541772	0.86[CEU][hapmap]
rs12544473	1.00[CEU][hapmap]
rs12544631	0.82[ASN][1000 genomes]
rs12545365	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12545915	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12545927	1.00[CEU][hapmap]
rs12677522	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12677964	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12678703	0.88[ASN][1000 genomes]
rs12679317	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12679356	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12679464	0.82[EUR][1000 genomes]
rs12680748	1.00[CEU][hapmap]
rs12681918	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13248969	1.00[CEU][hapmap]
rs13251587	0.82[ASN][1000 genomes]
rs13251725	1.00[CEU][hapmap]
rs13253758	0.89[CEU][hapmap]
rs13259996	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13260021	1.00[CEU][hapmap]
rs13260288	1.00[CEU][hapmap]
rs13273999	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs13278343	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs1375942	0.80[ASN][1000 genomes]
rs1375944	0.92[CEU][hapmap]
rs1375945	1.00[CEU][hapmap]
rs1375947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375948	1.00[CEU][hapmap]
rs1380789	1.00[CEU][hapmap]
rs1380790	0.96[CEU][hapmap]
rs1380792	1.00[CEU][hapmap]
rs1450132	1.00[CEU][hapmap]
rs1450135	0.92[CEU][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1450136	0.89[JPT][hapmap]
rs1597427	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1597428	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1597429	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1597430	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1597431	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs16914781	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17770910	1.00[CEU][hapmap]
rs1824462	1.00[CEU][hapmap]
rs1868639	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1901050	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2167157	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2840054	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2923059	0.81[ASN][1000 genomes]
rs2923062	0.81[ASN][1000 genomes]
rs2957600	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2957601	0.81[ASN][1000 genomes]
rs34651805	0.90[ASN][1000 genomes]
rs34908431	0.84[ASN][1000 genomes]
rs3919764	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4147344	0.81[ASN][1000 genomes]
rs4292700	0.81[ASN][1000 genomes]
rs4364645	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs4413786	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4448284	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4529480	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs4618709	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4873142	0.89[CEU][hapmap]
rs4873143	0.90[ASN][1000 genomes]
rs4873447	1.00[CEU][hapmap]
rs4873451	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4873452	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62515888	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6989084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994415	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6995334	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7000325	0.86[ASN][1000 genomes]
rs7003725	0.90[ASN][1000 genomes]
rs7464491	0.80[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7821189	0.86[ASN][1000 genomes]
rs7822367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822550	0.90[ASN][1000 genomes]
rs7834452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835144	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7845433	0.80[ASN][1000 genomes]
rs968944	1.00[CEU][hapmap]
rs968945	1.00[CEU][hapmap]
rs968947	1.00[CEU][hapmap]
rs983055	0.89[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51206200-51207600	Enhancers	Fetal Intestine Small	intestine
2	chr8:51206600-51207600	Enhancers	Liver	Liver
3	chr8:51207000-51207600	Enhancers	Fetal Intestine Large	intestine

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