Variant report

Variant	rs12678703
Chromosome Location	chr8:51194783-51194784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:51194558..51197541-chr8:51202196..51204695,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10957853	0.80[ASN][1000 genomes]
rs1160764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1160795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11783674	0.85[ASN][1000 genomes]
rs11784464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12056425	0.80[ASN][1000 genomes]
rs12056426	0.80[ASN][1000 genomes]
rs12545365	0.80[ASN][1000 genomes]
rs12545915	0.80[ASN][1000 genomes]
rs12677522	0.80[ASN][1000 genomes]
rs12677964	0.80[ASN][1000 genomes]
rs12679356	0.80[ASN][1000 genomes]
rs12681918	0.88[ASN][1000 genomes]
rs1375947	0.88[ASN][1000 genomes]
rs1450135	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1597427	0.88[ASN][1000 genomes]
rs1597428	0.80[ASN][1000 genomes]
rs1597429	0.80[ASN][1000 genomes]
rs1597430	0.80[ASN][1000 genomes]
rs1597431	0.80[ASN][1000 genomes]
rs1868638	0.88[ASN][1000 genomes]
rs1868639	0.88[ASN][1000 genomes]
rs1901050	0.80[ASN][1000 genomes]
rs2167157	0.88[ASN][1000 genomes]
rs2840054	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28510664	0.87[ASN][1000 genomes]
rs34217744	0.83[ASN][1000 genomes]
rs34651805	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34788367	0.85[ASN][1000 genomes]
rs35516514	0.83[ASN][1000 genomes]
rs35857674	0.87[ASN][1000 genomes]
rs3919764	0.86[ASN][1000 genomes]
rs4448284	0.80[ASN][1000 genomes]
rs4618709	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4873141	0.87[ASN][1000 genomes]
rs4873143	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4873438	0.87[ASN][1000 genomes]
rs4873439	0.87[ASN][1000 genomes]
rs4873451	0.88[ASN][1000 genomes]
rs4873452	0.88[ASN][1000 genomes]
rs62515888	0.90[ASN][1000 genomes]
rs6989084	0.88[ASN][1000 genomes]
rs6990514	0.88[ASN][1000 genomes]
rs7003725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7464491	0.80[ASN][1000 genomes]
rs7822367	0.88[ASN][1000 genomes]
rs7822550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7834452	0.88[ASN][1000 genomes]
rs7835144	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv12937	chr8:51182892-51195695	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv611344	chr8:51186606-51194783	Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv611345	chr8:51186606-51195151	Active TSS ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv611346	chr8:51188675-51194783	Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv611347	chr8:51188675-51195151	ZNF genes & repeats Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51193600-51195000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links