Variant report
| Variant | rs4413786 |
|---|---|
| Chromosome Location | chr8:51239096-51239097 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10086867 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10957894 | 0.82[EUR][1000 genomes] |
| rs11783674 | 0.82[AMR][1000 genomes] |
| rs12679464 | 0.88[EUR][1000 genomes] |
| rs12681918 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs13259996 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs13278343 | 0.88[EUR][1000 genomes] |
| rs1375947 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1597427 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs16914781 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1868638 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1868639 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2167157 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2957600 | 0.96[EUR][1000 genomes] |
| rs3919764 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4364645 | 0.88[EUR][1000 genomes] |
| rs4529480 | 0.88[EUR][1000 genomes] |
| rs4873451 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4873452 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62515888 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6989084 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6990514 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6994415 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6995334 | 0.87[EUR][1000 genomes] |
| rs7822367 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7834452 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs983055 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916392 | chr8:50827638-51395140 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv948436 | chr8:51115028-51917504 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv1828291 | chr8:51225111-51246823 | ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv1832233 | chr8:51225111-51256438 | ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv1827302 | chr8:51225496-51246823 | Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:51239000-51239400 | Active TSS | Liver | Liver |
