Variant report

Variant	rs13259996
Chromosome Location	chr8:51265056-51265057
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10086867	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10957894	0.87[EUR][1000 genomes]
rs11783674	0.81[AMR][1000 genomes]
rs12679464	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12681918	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13278343	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1375942	0.85[ASN][1000 genomes]
rs1375947	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1597427	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16914781	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1868638	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1868639	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2167157	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2923059	0.84[ASN][1000 genomes]
rs2923062	0.84[ASN][1000 genomes]
rs2957600	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2957601	0.84[ASN][1000 genomes]
rs3919764	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4147344	0.84[ASN][1000 genomes]
rs4292700	0.84[ASN][1000 genomes]
rs4364645	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4413786	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4529480	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4639524	0.82[ASN][1000 genomes]
rs4873451	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4873452	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62515888	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6989084	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6990514	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6994415	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6995334	0.87[EUR][1000 genomes]
rs7816983	0.82[ASN][1000 genomes]
rs7822367	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7834452	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7845433	0.83[ASN][1000 genomes]
rs983055	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2753909	chr8:51261103-51269514	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51243200-51271600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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