Variant report

Variant	rs12679464
Chromosome Location	chr8:51313919-51313920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10086867	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1117213	0.82[ASN][1000 genomes]
rs12545003	0.86[AFR][1000 genomes]
rs12546829	0.86[AFR][1000 genomes]
rs12675994	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12681918	0.83[EUR][1000 genomes]
rs13259996	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13278343	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375942	0.95[ASN][1000 genomes]
rs1375947	0.83[EUR][1000 genomes]
rs1597427	0.83[EUR][1000 genomes]
rs1597432	0.82[ASN][1000 genomes]
rs1597433	0.82[ASN][1000 genomes]
rs16914780	0.82[ASN][1000 genomes]
rs16914781	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1868638	0.82[EUR][1000 genomes]
rs1868639	0.83[EUR][1000 genomes]
rs1947254	0.82[ASN][1000 genomes]
rs2167157	0.82[EUR][1000 genomes]
rs2923059	0.96[ASN][1000 genomes]
rs2923062	0.96[ASN][1000 genomes]
rs2957598	0.82[ASN][1000 genomes]
rs2957600	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957601	0.96[ASN][1000 genomes]
rs35063719	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs3919764	0.83[EUR][1000 genomes]
rs4147344	0.96[ASN][1000 genomes]
rs4242460	0.84[ASN][1000 genomes]
rs4256602	0.83[ASN][1000 genomes]
rs4292700	0.96[ASN][1000 genomes]
rs4339654	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4364645	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4410921	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4413786	0.88[EUR][1000 genomes]
rs4529480	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4534138	0.82[ASN][1000 genomes]
rs4604450	0.84[ASN][1000 genomes]
rs4639524	0.96[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4873451	0.83[EUR][1000 genomes]
rs4873452	0.83[EUR][1000 genomes]
rs4873453	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs62515888	0.82[EUR][1000 genomes]
rs6473114	0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6989084	0.82[EUR][1000 genomes]
rs6990514	0.83[EUR][1000 genomes]
rs6994415	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6995334	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7005672	0.83[ASN][1000 genomes]
rs7015950	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7816983	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7822367	0.83[EUR][1000 genomes]
rs7834452	0.83[EUR][1000 genomes]
rs7839253	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7845433	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs983055	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51300000-51319800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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