Variant report

Variant	rs12675994
Chromosome Location	chr8:51299103-51299104
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10086867	0.82[ASN][1000 genomes]
rs10504106	1.00[EUR][1000 genomes]
rs1117213	0.98[ASN][1000 genomes]
rs11783674	0.85[ASN][1000 genomes]
rs11989809	1.00[EUR][1000 genomes]
rs12155652	0.99[EUR][1000 genomes]
rs12541707	1.00[EUR][1000 genomes]
rs12545003	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12546829	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12679464	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13257851	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13278343	0.95[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1375942	0.83[ASN][1000 genomes]
rs1481471	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1597432	0.98[ASN][1000 genomes]
rs1597433	0.98[ASN][1000 genomes]
rs16914780	0.98[ASN][1000 genomes]
rs16914781	0.82[ASN][1000 genomes]
rs1947254	0.98[ASN][1000 genomes]
rs2923059	0.84[ASN][1000 genomes]
rs2923062	0.84[ASN][1000 genomes]
rs2957598	0.98[ASN][1000 genomes]
rs2957600	0.82[ASN][1000 genomes]
rs2957601	0.84[ASN][1000 genomes]
rs35063719	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147344	0.84[ASN][1000 genomes]
rs4242460	1.00[ASN][1000 genomes]
rs4256602	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4292700	0.84[ASN][1000 genomes]
rs4339654	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4364645	0.95[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4410921	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4529480	0.93[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4534138	0.98[ASN][1000 genomes]
rs4604450	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4639524	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4873453	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6473114	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994415	0.82[ASN][1000 genomes]
rs6995334	0.84[AFR][1000 genomes]
rs7005672	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7015950	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816983	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7820992	1.00[EUR][1000 genomes]
rs7839253	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845433	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs983055	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51293800-51299200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links