Variant report

Variant	rs4604450
Chromosome Location	chr8:51296925-51296926
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10086867	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs10092399	0.89[JPT][hapmap]
rs10103047	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs10113812	0.89[JPT][hapmap]
rs10504106	0.88[CEU][hapmap];1.00[EUR][1000 genomes]
rs1117213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1160764	0.89[JPT][hapmap]
rs1160795	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs11783674	0.85[ASN][1000 genomes]
rs11989809	1.00[EUR][1000 genomes]
rs12155652	0.99[EUR][1000 genomes]
rs12541707	1.00[EUR][1000 genomes]
rs12541772	0.89[JPT][hapmap]
rs12545003	0.89[CEU][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12546829	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12675994	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12679464	0.84[ASN][1000 genomes]
rs13257851	0.89[CEU][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13260288	0.84[CHB][hapmap]
rs13275607	0.89[JPT][hapmap]
rs13278343	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs1375942	0.92[CHB][hapmap];0.83[ASN][1000 genomes]
rs1375944	0.86[JPT][hapmap]
rs1380792	0.84[CHB][hapmap]
rs1450124	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs1460437	0.89[JPT][hapmap]
rs1481471	0.89[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1597426	0.84[CHB][hapmap]
rs1597432	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1597433	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16914780	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16914781	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs17770910	0.86[JPT][hapmap]
rs1947254	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2219574	0.89[JPT][hapmap]
rs2923059	0.93[CHB][hapmap];0.84[ASN][1000 genomes]
rs2923062	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs2957598	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2957600	0.84[CHB][hapmap];0.82[ASN][1000 genomes]
rs2957601	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs35063719	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147344	0.93[CHB][hapmap];0.84[ASN][1000 genomes]
rs4242460	1.00[ASN][1000 genomes]
rs4256602	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4292700	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs4339654	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4364645	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs4410921	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4529480	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs4534138	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4639524	0.92[CHB][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4873141	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs4873143	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs4873438	0.89[JPT][hapmap]
rs4873439	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs4873443	0.89[JPT][hapmap]
rs4873453	0.98[ASN][1000 genomes]
rs6473114	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994415	0.82[ASN][1000 genomes]
rs6999627	0.84[CHB][hapmap]
rs7003725	0.89[JPT][hapmap]
rs7005672	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7015950	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816983	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7820992	0.89[CEU][hapmap];1.00[EUR][1000 genomes]
rs7839253	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845433	0.83[ASN][1000 genomes]
rs9643720	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51293800-51299200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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