Variant report

Variant	rs2219574
Chromosome Location	chr8:51196413-51196414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:51194558..51197541-chr8:51202196..51204695,2	MCF-7	breast:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10092399	1.00[JPT][hapmap]
rs10103047	0.96[CEU][hapmap];0.93[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs10113812	1.00[JPT][hapmap]
rs10504099	0.86[CHB][hapmap]
rs10957853	0.85[CHB][hapmap]
rs1117213	0.92[JPT][hapmap]
rs1160764	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1160795	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11783674	0.84[ASN][1000 genomes]
rs11784464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11784719	0.93[CHB][hapmap]
rs12056425	0.86[CHB][hapmap]
rs12056426	0.86[CHB][hapmap]
rs12541382	1.00[CEU][hapmap]
rs12541772	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs12544473	0.90[CHB][hapmap]
rs12545003	0.83[JPT][hapmap]
rs12545915	0.86[CHB][hapmap]
rs12545927	0.92[CHB][hapmap]
rs12677964	0.82[CHB][hapmap]
rs12678703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12679356	0.86[CHB][hapmap]
rs12680748	0.93[CHB][hapmap]
rs12681918	0.87[ASN][1000 genomes]
rs13248969	0.92[CHB][hapmap]
rs13251725	0.92[CHB][hapmap]
rs13252320	0.84[CHB][hapmap]
rs13253758	0.84[CEU][hapmap];0.93[CHB][hapmap]
rs13257851	0.83[JPT][hapmap]
rs13260021	0.92[CHB][hapmap]
rs13260288	0.93[CHB][hapmap]
rs13275607	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs13282956	0.85[CHB][hapmap]
rs1349316	0.86[CHB][hapmap]
rs1375944	0.82[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap]
rs1375945	0.93[CHB][hapmap]
rs1375947	0.87[ASN][1000 genomes]
rs1375948	0.93[CHB][hapmap]
rs1380789	0.93[CHB][hapmap]
rs1380790	0.84[CHB][hapmap]
rs1380791	0.93[CHB][hapmap]
rs1380792	0.81[CEU][hapmap];0.93[CHB][hapmap]
rs1450124	0.96[CEU][hapmap];0.93[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs1450132	0.93[CHB][hapmap]
rs1450135	0.84[CEU][hapmap];0.85[CHB][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1460437	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1481471	0.83[JPT][hapmap]
rs1597427	0.87[ASN][1000 genomes]
rs1597428	0.86[CHB][hapmap]
rs1597430	0.86[CHB][hapmap]
rs1597431	0.85[CHB][hapmap]
rs1597432	0.92[JPT][hapmap]
rs1597433	0.92[JPT][hapmap]
rs16914780	0.83[JPT][hapmap]
rs17770910	0.91[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1824462	0.81[CEU][hapmap];0.93[CHB][hapmap]
rs1868638	0.87[ASN][1000 genomes]
rs1868639	0.93[CHB][hapmap];0.87[ASN][1000 genomes]
rs1901055	0.86[CHB][hapmap]
rs1901056	0.93[CHB][hapmap]
rs1947254	0.92[JPT][hapmap]
rs2167157	0.93[CHB][hapmap];0.87[ASN][1000 genomes]
rs2840054	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28510664	0.86[ASN][1000 genomes]
rs2957598	0.92[JPT][hapmap]
rs34217744	0.82[ASN][1000 genomes]
rs34651805	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34788367	0.84[ASN][1000 genomes]
rs35516514	0.82[ASN][1000 genomes]
rs35857674	0.86[ASN][1000 genomes]
rs3919764	0.85[ASN][1000 genomes]
rs4256602	0.92[JPT][hapmap]
rs4339654	0.92[JPT][hapmap]
rs4398931	0.86[CHB][hapmap]
rs4410921	0.90[JPT][hapmap]
rs4448284	0.86[CHB][hapmap]
rs4534138	0.92[JPT][hapmap]
rs4543555	0.86[CHB][hapmap]
rs4577969	0.86[CHB][hapmap]
rs4604450	0.89[JPT][hapmap]
rs4618709	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4633068	0.86[CHB][hapmap]
rs4873141	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4873142	0.84[CEU][hapmap];0.93[CHB][hapmap]
rs4873143	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4873438	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4873439	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4873443	1.00[JPT][hapmap]
rs4873447	0.93[CHB][hapmap]
rs4873451	0.87[ASN][1000 genomes]
rs4873452	0.87[ASN][1000 genomes]
rs62515888	0.89[ASN][1000 genomes]
rs6989084	0.87[ASN][1000 genomes]
rs6990514	0.87[ASN][1000 genomes]
rs7003725	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7005672	0.92[JPT][hapmap]
rs7015950	0.91[JPT][hapmap]
rs7464491	0.86[CHB][hapmap]
rs7822367	0.87[ASN][1000 genomes]
rs7822550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7834452	0.87[ASN][1000 genomes]
rs7835144	0.83[ASN][1000 genomes]
rs7839253	0.92[JPT][hapmap]
rs9643720	1.00[JPT][hapmap]
rs968944	0.84[CHB][hapmap]
rs968945	0.93[CHB][hapmap]
rs968947	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links