Variant report

Variant	rs10092399
Chromosome Location	chr8:51151614-51151615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 131 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs10093604	0.83[CEU][hapmap]
rs10094935	0.89[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10098057	0.86[MEX][hapmap]
rs10103047	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs10108468	0.83[ASW][hapmap];0.84[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10109835	0.94[CEU][hapmap];0.81[CHB][hapmap]
rs10113812	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs10504099	0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10808817	0.92[CHB][hapmap]
rs10957853	0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1117213	0.92[JPT][hapmap]
rs1160764	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1160795	0.88[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11784464	0.80[ASN][1000 genomes]
rs11986160	0.81[MEX][hapmap]
rs11987017	0.82[JPT][hapmap]
rs12056425	0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12056426	0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12541772	1.00[JPT][hapmap]
rs12542067	0.86[MEX][hapmap]
rs12544631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12545003	0.83[JPT][hapmap]
rs12545365	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12545915	0.86[CHB][hapmap];0.85[CHD][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12548940	0.88[CEU][hapmap]
rs12677522	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12677964	0.91[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12678703	0.83[ASN][1000 genomes]
rs12679317	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12679356	0.83[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13249415	0.92[CHB][hapmap]
rs13251587	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13252320	0.84[CHB][hapmap]
rs13257851	0.83[JPT][hapmap]
rs13260265	0.83[CHD][hapmap];0.81[MEX][hapmap]
rs13260288	0.84[CHD][hapmap]
rs13275607	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs13282956	0.85[CHB][hapmap]
rs1349316	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs1349317	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs1375944	0.91[JPT][hapmap]
rs1380792	0.88[CHD][hapmap]
rs1450124	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs1450127	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1450135	0.81[CHD][hapmap]
rs1460437	1.00[JPT][hapmap]
rs1481471	0.83[JPT][hapmap]
rs1597426	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs1597428	0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1597429	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1597430	0.86[CHB][hapmap];0.92[CHD][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1597431	0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1597432	0.92[JPT][hapmap]
rs1597433	0.92[JPT][hapmap]
rs16914346	0.81[MEX][hapmap]
rs16914780	0.83[JPT][hapmap]
rs17770910	0.89[JPT][hapmap]
rs1901050	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1901055	0.86[CHB][hapmap]
rs1947254	0.92[JPT][hapmap]
rs203612	0.81[MEX][hapmap]
rs203632	0.81[MEX][hapmap]
rs203908	0.81[MEX][hapmap]
rs203930	0.81[MEX][hapmap]
rs203932	0.81[MEX][hapmap]
rs203940	0.81[MEX][hapmap]
rs203953	0.83[JPT][hapmap]
rs203964	0.83[JPT][hapmap]
rs2084590	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2084591	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2219574	1.00[JPT][hapmap]
rs28510664	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2957598	0.92[JPT][hapmap]
rs34217744	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34651805	0.80[ASN][1000 genomes]
rs34788367	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34908431	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35516514	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35857674	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3922033	0.94[CEU][hapmap];1.00[TSI][hapmap]
rs4256602	0.92[JPT][hapmap]
rs4330704	0.92[CHB][hapmap]
rs4339654	0.92[JPT][hapmap]
rs4398931	0.86[CHB][hapmap]
rs4410921	0.90[JPT][hapmap]
rs4448283	0.83[EUR][1000 genomes]
rs4448284	0.86[CHB][hapmap];0.92[CHD][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4534138	0.92[JPT][hapmap]
rs4543555	0.86[CHB][hapmap]
rs4577969	0.86[CHB][hapmap]
rs4604450	0.89[JPT][hapmap]
rs4633068	0.86[CHB][hapmap]
rs4873131	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4873132	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4873133	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4873134	0.83[EUR][1000 genomes]
rs4873135	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4873141	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4873143	0.92[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4873408	0.86[MEX][hapmap]
rs4873426	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4873427	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4873428	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4873438	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4873439	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4873442	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs4873443	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs6981805	0.92[CHB][hapmap]
rs6983498	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6988843	0.81[MEX][hapmap]
rs6999627	0.89[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs7000325	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7003725	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7005672	0.92[JPT][hapmap]
rs7015950	0.91[JPT][hapmap]
rs7017642	1.00[CEU][hapmap];0.92[CHB][hapmap]
rs7018082	0.82[EUR][1000 genomes]
rs7464491	0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7817040	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7817638	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7821189	1.00[CEU][hapmap];0.92[CHB][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7822550	0.80[ASN][1000 genomes]
rs7835849	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7839253	0.92[JPT][hapmap]
rs9298278	0.86[MEX][hapmap]
rs9298279	0.86[MEX][hapmap]
rs9298295	1.00[CEU][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs9643720	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs987356	0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10092399	SNTG1	cis	cerebellum	SCAN
rs10092399	C8orf22	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links