Variant report

Variant	rs1481471
Chromosome Location	chr8:51329726-51329727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10092399	0.83[JPT][hapmap]
rs10103047	0.83[JPT][hapmap]
rs10113812	0.83[JPT][hapmap]
rs10504100	0.83[CEU][hapmap]
rs10504103	0.83[CEU][hapmap]
rs10504106	1.00[CEU][hapmap];0.93[TSI][hapmap];0.98[EUR][1000 genomes]
rs1117213	0.83[CEU][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap]
rs1160764	0.83[JPT][hapmap]
rs1160795	0.83[JPT][hapmap]
rs11782140	0.83[CEU][hapmap]
rs11989809	0.98[EUR][1000 genomes]
rs12155652	0.97[EUR][1000 genomes]
rs12156091	0.83[CEU][hapmap]
rs12540980	0.83[CEU][hapmap]
rs12541707	0.98[EUR][1000 genomes]
rs12541772	0.83[JPT][hapmap]
rs12544425	0.83[CEU][hapmap]
rs12545003	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12546829	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12547242	0.83[CEU][hapmap]
rs12548399	0.83[CEU][hapmap]
rs12675994	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13257386	0.83[CEU][hapmap]
rs13257851	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13260506	0.83[CEU][hapmap]
rs13261341	0.82[CEU][hapmap]
rs13282203	0.82[CEU][hapmap]
rs1375942	0.80[CEU][hapmap]
rs1450124	0.83[JPT][hapmap]
rs1450131	0.83[CEU][hapmap]
rs1460437	0.83[JPT][hapmap]
rs1466128	0.83[CEU][hapmap]
rs1470680	0.83[CEU][hapmap]
rs1548073	0.81[CEU][hapmap]
rs1597432	0.83[CEU][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap]
rs1597433	0.92[JPT][hapmap]
rs16914780	0.83[CEU][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];0.83[JPT][hapmap]
rs17769846	0.83[CEU][hapmap]
rs1947254	0.83[CEU][hapmap];0.92[JPT][hapmap]
rs2044777	0.83[CEU][hapmap]
rs2044778	0.83[CEU][hapmap]
rs2219574	0.83[JPT][hapmap]
rs2923059	0.80[CEU][hapmap]
rs2923062	0.80[CEU][hapmap]
rs2957598	0.83[CEU][hapmap];0.92[JPT][hapmap]
rs2957599	0.82[CEU][hapmap]
rs2957600	0.80[ASW][hapmap]
rs2957601	0.80[ASW][hapmap];0.80[CEU][hapmap]
rs35063719	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4242460	0.80[ASN][1000 genomes]
rs4256602	1.00[CEU][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4263785	0.83[CEU][hapmap]
rs4339654	0.87[ASW][hapmap];1.00[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4364645	0.87[ASW][hapmap]
rs4379460	0.83[CEU][hapmap]
rs4410921	1.00[CEU][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4529480	0.87[ASW][hapmap]
rs4534138	0.83[CEU][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap]
rs4604450	0.89[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4639524	0.80[CEU][hapmap];0.81[AMR][1000 genomes]
rs4873141	0.83[JPT][hapmap]
rs4873143	0.83[JPT][hapmap]
rs4873438	0.83[JPT][hapmap]
rs4873439	0.83[JPT][hapmap]
rs4873443	0.83[JPT][hapmap]
rs6473114	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6995334	0.88[CHB][hapmap];0.86[ASN][1000 genomes]
rs7003725	0.83[JPT][hapmap]
rs7005672	1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7015950	0.87[ASW][hapmap];1.00[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7816983	0.81[AMR][1000 genomes]
rs7820992	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs7839253	0.87[ASW][hapmap];1.00[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs896023	0.83[CEU][hapmap]
rs930671	0.83[CEU][hapmap]
rs9643720	0.83[JPT][hapmap]
rs983055	0.88[CHB][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916262	chr8:51322341-51437077	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1481471	SNTG1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51320600-51343200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links