Variant report

Variant	rs4873453
Chromosome Location	chr8:51294593-51294594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C8orf22-6	chr8:51294466-51294835	ENSG00000253849.1

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10086867	0.80[ASN][1000 genomes]
rs10101137	0.97[EUR][1000 genomes]
rs10504100	0.86[EUR][1000 genomes]
rs1117213	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11782140	0.98[EUR][1000 genomes]
rs11783674	0.83[ASN][1000 genomes]
rs12156091	0.98[EUR][1000 genomes]
rs12540980	0.98[EUR][1000 genomes]
rs12544425	0.98[EUR][1000 genomes]
rs12545003	0.80[AFR][1000 genomes]
rs12546829	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12547038	0.86[EUR][1000 genomes]
rs12547242	0.98[EUR][1000 genomes]
rs12548399	0.91[EUR][1000 genomes]
rs12675994	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12679464	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13257386	0.98[EUR][1000 genomes]
rs13260506	0.98[EUR][1000 genomes]
rs13261341	0.98[EUR][1000 genomes]
rs13278343	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13282203	0.98[EUR][1000 genomes]
rs1375942	0.81[ASN][1000 genomes]
rs1450131	0.91[EUR][1000 genomes]
rs1466128	0.91[EUR][1000 genomes]
rs1470680	0.86[EUR][1000 genomes]
rs1548073	0.91[EUR][1000 genomes]
rs1597432	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1597433	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16914780	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16914781	0.80[ASN][1000 genomes]
rs1947254	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2044777	0.91[EUR][1000 genomes]
rs2044778	0.88[EUR][1000 genomes]
rs28669842	0.98[EUR][1000 genomes]
rs2923059	0.82[ASN][1000 genomes]
rs2923062	0.82[ASN][1000 genomes]
rs2957598	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2957599	0.91[EUR][1000 genomes]
rs2957600	0.80[ASN][1000 genomes]
rs2957601	0.82[ASN][1000 genomes]
rs34113623	0.86[EUR][1000 genomes]
rs34365466	0.90[EUR][1000 genomes]
rs34530560	0.86[EUR][1000 genomes]
rs35063719	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35894781	0.91[EUR][1000 genomes]
rs4147344	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4242460	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4256602	0.96[ASN][1000 genomes]
rs4263785	0.98[EUR][1000 genomes]
rs4292700	0.82[ASN][1000 genomes]
rs4339654	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4364645	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4379460	0.98[EUR][1000 genomes]
rs4410921	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4529480	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4534138	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4604450	0.98[ASN][1000 genomes]
rs4639524	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs62517613	0.98[EUR][1000 genomes]
rs62517614	0.98[EUR][1000 genomes]
rs6473114	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6994415	0.80[ASN][1000 genomes]
rs7005672	0.96[ASN][1000 genomes]
rs7015950	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7816983	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7839253	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7845433	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs896023	0.91[EUR][1000 genomes]
rs930671	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3431002	chr8:51293424-51295422	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51293800-51299200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links