Variant report

Variant	rs10514938
Chromosome Location	chr17:46322604-46322605
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46321872..46325036-chr17:46699113..46702600,4	K562	blood:
2	chr17:46322050..46323766-chr17:46722866..46724974,2	K562	blood:
3	chr17:46320871..46323469-chr17:46343037..46345002,2	K562	blood:
4	chr17:46316932..46321831-chr17:46322420..46326261,9	K562	blood:
5	chr17:46320855..46323440-chr17:46697694..46700613,3	K562	blood:

Variant related genes	Relation type
ENSG00000272763	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11650615	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1472966	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs16952265	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16953235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16953382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16953461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16953925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16954078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17695373	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17696392	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs41280120	1.00[ASN][1000 genomes]
rs41336845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7216504	1.00[ASN][1000 genomes]
rs72823527	1.00[ASN][1000 genomes]
rs72823530	1.00[ASN][1000 genomes]
rs72823534	1.00[ASN][1000 genomes]
rs72823591	1.00[ASN][1000 genomes]
rs72823599	1.00[ASN][1000 genomes]
rs72823601	1.00[ASN][1000 genomes]
rs72825504	1.00[ASN][1000 genomes]
rs72825512	1.00[ASN][1000 genomes]
rs72825517	1.00[ASN][1000 genomes]
rs72825548	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72825584	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72827814	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72827830	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72827832	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72827834	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72827839	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72827876	0.83[AFR][1000 genomes]
rs72827877	0.83[AFR][1000 genomes]
rs72827882	0.83[AFR][1000 genomes]
rs8067005	1.00[ASN][1000 genomes]
rs8073371	1.00[ASN][1000 genomes]
rs9904637	1.00[CHB][hapmap]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46306600-46335400	Weak transcription	Thymus	Thymus
2	chr17:46315800-46323000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr17:46316400-46322800	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr17:46316400-46324600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr17:46317200-46324000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr17:46317400-46322800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr17:46317400-46322800	Enhancers	Fetal Intestine Large	intestine
8	chr17:46317800-46323000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr17:46319000-46324800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr17:46319600-46322800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr17:46319800-46323200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr17:46319800-46323600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr17:46319800-46324000	Weak transcription	Placenta	Placenta
15	chr17:46321000-46324800	Enhancers	NHEK	skin
16	chr17:46321200-46322800	Enhancers	Osteobl	bone
17	chr17:46321400-46322800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr17:46321400-46322800	Flanking Active TSS	K562	blood
19	chr17:46321400-46324200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr17:46321400-46325000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr17:46321600-46322800	Enhancers	Duodenum Mucosa	Duodenum
22	chr17:46321800-46323000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr17:46321800-46325400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr17:46322000-46323800	Weak transcription	NH-A	brain
25	chr17:46322000-46324400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr17:46322000-46326000	Weak transcription	Fetal Thymus	thymus
27	chr17:46322400-46323200	Enhancers	Primary T cells fromperipheralblood	blood
28	chr17:46322400-46323600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr17:46322400-46323600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr17:46322400-46323600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr17:46322400-46323800	Weak transcription	Primary T cells from cord blood	blood
32	chr17:46322400-46324000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr17:46322400-46328200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr17:46322400-46328200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr17:46322600-46323000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr17:46322600-46323400	Enhancers	A549	lung
37	chr17:46322600-46323600	Weak transcription	GM12878-XiMat	blood
38	chr17:46322600-46323600	Weak transcription	HMEC	breast
39	chr17:46322600-46323600	Weak transcription	HSMM	muscle
40	chr17:46322600-46324000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr17:46322600-46324000	Weak transcription	NHDF-Ad	bronchial
42	chr17:46322600-46324600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr17:46322600-46325000	Enhancers	HUVEC	blood vessel
44	chr17:46322600-46328000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr17:46322600-46328200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr17:46322600-46328200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr17:46322600-46329400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr17:46322600-46341800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr17:46322600-46342200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links