The 2.0 version of rSNPBase

Variant report

Variant rs16954204
Chromosome Location chr17:46315198-46315199
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:46266800-46318200 Weak transcription Primary B cells from peripheral blood blood
2 chr17:46294000-46318000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr17:46302600-46315800 Weak transcription GM12878-XiMat blood
4 chr17:46305200-46317600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr17:46306600-46335400 Weak transcription Thymus Thymus
6 chr17:46310200-46315800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
7 chr17:46312400-46315400 Enhancers NHEK skin
8 chr17:46312800-46315200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr17:46312800-46315400 Enhancers HMEC breast
10 chr17:46312800-46318800 Enhancers HUVEC blood vessel
11 chr17:46313000-46315400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr17:46313000-46315400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr17:46313000-46318000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr17:46313400-46316400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr17:46313400-46316400 Weak transcription Primary T cells fromperipheralblood blood
16 chr17:46313800-46315400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr17:46314000-46315200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
18 chr17:46314000-46315200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
19 chr17:46314000-46315200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
20 chr17:46314000-46315400 Enhancers Primary T helper cells PMA-I stimulated --
21 chr17:46314000-46315400 Enhancers HSMM muscle
22 chr17:46314000-46315400 Enhancers Osteobl bone
23 chr17:46314000-46318000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr17:46314000-46318200 Enhancers NHDF-Ad bronchial
25 chr17:46314200-46315200 Enhancers Primary T helper naive cells from peripheral blood blood
26 chr17:46314200-46315600 Enhancers Primary T helper naive cells fromperipheralblood blood
27 chr17:46314200-46320200 Enhancers Primary T killer naive cells fromperipheralblood blood
28 chr17:46314400-46315200 Genic enhancers Primary T helper memory cells from peripheral blood 1 blood
29 chr17:46314400-46315200 Enhancers Primary T helper 17 cells PMA-I stimulated --
30 chr17:46314600-46315200 Enhancers Primary T cells from cord blood blood
31 chr17:46314600-46316600 Weak transcription K562 blood
32 chr17:46314800-46315200 Enhancers NHLF lung
33 chr17:46315000-46316200 Weak transcription Primary T helper cells fromperipheralblood blood
34 chr17:46315000-46316400 Weak transcription Primary T killer memory cells from peripheral blood blood
35 chr17:46315000-46316400 Weak transcription NH-A brain
36 chr17:46315000-46317600 Weak transcription Muscle Satellite Cultured Cells --
37 chr17:46315000-46317800 Weak transcription Hela-S3 cervix
38 chr17:46315000-46318000 Weak transcription Primary T regulatory cells fromperipheralblood blood
39 chr17:46315000-46318000 Enhancers A549 lung

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Last update: Aug 31, 2015