Variant report

Variant	rs72827814
Chromosome Location	chr17:46366960-46366961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46364990..46368177-chr17:46369841..46373238,3	K562	blood:
2	chr17:46355824..46358682-chr17:46365555..46368141,2	K562	blood:

Variant related genes	Relation type
ENSG00000235300	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10514938	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1472966	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953235	1.00[AFR][1000 genomes]
rs16953382	1.00[AFR][1000 genomes]
rs16953461	1.00[AFR][1000 genomes]
rs16953925	1.00[AFR][1000 genomes]
rs16954078	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16954204	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17624626	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17695373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17696392	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825584	1.00[AFR][1000 genomes]
rs72827830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827832	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827834	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827839	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827876	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72827877	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72827882	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72827885	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72827887	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:46343400-46371200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:46356600-46370000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr17:46356600-46370800	Weak transcription	GM12878-XiMat	blood
7	chr17:46357000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr17:46357000-46371200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:46357400-46371200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr17:46357600-46371400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr17:46358200-46371000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr17:46361400-46371000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr17:46361600-46367800	Weak transcription	Stomach Mucosa	stomach
14	chr17:46361600-46371000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr17:46361600-46371800	Weak transcription	Primary T cells from cord blood	blood
16	chr17:46362200-46371000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr17:46363200-46370800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr17:46364000-46367400	Weak transcription	A549	lung

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