Variant report

Variant	rs72825584
Chromosome Location	chr17:46293089-46293090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:46292574..46293563-chr17:46384878..46385708,4	MCF-7	breast:
2	chr17:46292856..46293447-chr17:46385046..46385772,2	MCF-7	breast:
3	chr17:46292783..46295645-chr17:46342921..46345128,2	K562	blood:
4	chr17:46286598..46289280-chr17:46291175..46294782,3	K562	blood:
5	chr17:46292744..46293326-chr17:46451926..46452607,2	MCF-7	breast:
6	chr17:46292724..46293589-chr17:46413037..46413890,2	MCF-7	breast:
7	chr17:46292623..46293264-chr17:46337039..46337586,2	MCF-7	breast:
8	chr17:46292649..46293615-chr17:46326688..46327277,2	K562	blood:
9	chr17:46292934..46293494-chr17:46451651..46452180,2	K562	blood:
10	chr17:46292653..46293618-chr17:46336496..46337643,9	MCF-7	breast:
11	chr17:46292663..46294856-chr17:46339280..46340993,2	MCF-7	breast:
12	chr17:46292707..46293506-chr17:46670895..46671869,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000120075	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10514938	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11650615	1.00[ASN][1000 genomes]
rs1472966	1.00[AFR][1000 genomes]
rs16952265	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953235	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953382	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953461	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954078	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954204	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17695373	1.00[AFR][1000 genomes]
rs17696392	1.00[AFR][1000 genomes]
rs41280120	1.00[ASN][1000 genomes]
rs41336845	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216504	1.00[ASN][1000 genomes]
rs72823527	1.00[ASN][1000 genomes]
rs72823530	1.00[ASN][1000 genomes]
rs72823534	1.00[ASN][1000 genomes]
rs72823591	1.00[ASN][1000 genomes]
rs72823599	1.00[ASN][1000 genomes]
rs72823601	1.00[ASN][1000 genomes]
rs72825504	1.00[ASN][1000 genomes]
rs72825512	1.00[ASN][1000 genomes]
rs72825517	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825548	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827814	1.00[AFR][1000 genomes]
rs72827830	1.00[AFR][1000 genomes]
rs72827832	1.00[AFR][1000 genomes]
rs72827834	1.00[AFR][1000 genomes]
rs72827839	1.00[AFR][1000 genomes]
rs72827876	0.83[AFR][1000 genomes]
rs72827877	0.83[AFR][1000 genomes]
rs72827882	0.83[AFR][1000 genomes]
rs8067005	1.00[ASN][1000 genomes]
rs8073371	1.00[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46298600	Weak transcription	Thymus	Thymus
2	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr17:46273200-46302800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:46274200-46297200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:46280000-46295800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr17:46283600-46314000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr17:46286800-46297400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr17:46287800-46293200	Weak transcription	GM12878-XiMat	blood
10	chr17:46288400-46307000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr17:46289600-46294600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr17:46291600-46294200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr17:46292000-46294600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr17:46292600-46294000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr17:46292600-46295200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:46292800-46293600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr17:46292800-46293600	Enhancers	K562	blood
18	chr17:46292800-46293800	Enhancers	A549	lung
19	chr17:46292800-46296000	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr17:46292800-46298600	Strong transcription	Primary T cells from cord blood	blood
21	chr17:46293000-46293400	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr17:46293000-46293800	Enhancers	HUVEC	blood vessel
23	chr17:46293000-46297200	Strong transcription	Primary T helper cells fromperipheralblood	blood

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