Variant report

Variant	rs16954078
Chromosome Location	chr17:46306127-46306128
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46304702..46306804-chr17:46316986..46319945,3	K562	blood:
2	chr17:46304803..46307483-chr17:46322659..46325078,2	K562	blood:
3	chr17:46305304..46308204-chr17:46318445..46319954,2	K562	blood:
4	chr17:46303456..46306699-chr17:46306706..46309009,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10514938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11650615	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1472966	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs16952265	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16953235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17695373	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17696392	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs41280120	1.00[ASN][1000 genomes]
rs41336845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7216504	1.00[ASN][1000 genomes]
rs72823527	1.00[ASN][1000 genomes]
rs72823530	1.00[ASN][1000 genomes]
rs72823534	1.00[ASN][1000 genomes]
rs72823591	1.00[ASN][1000 genomes]
rs72823599	1.00[ASN][1000 genomes]
rs72823601	1.00[ASN][1000 genomes]
rs72825504	1.00[ASN][1000 genomes]
rs72825512	1.00[ASN][1000 genomes]
rs72825517	1.00[ASN][1000 genomes]
rs72825548	1.00[ASN][1000 genomes]
rs72825584	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827814	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72827830	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72827832	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72827834	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72827839	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs72827876	0.83[AFR][1000 genomes]
rs72827877	0.83[AFR][1000 genomes]
rs72827882	0.83[AFR][1000 genomes]
rs8067005	1.00[ASN][1000 genomes]
rs8073371	1.00[ASN][1000 genomes]
rs9904637	1.00[CHB][hapmap]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr17:46283600-46314000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr17:46288400-46307000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr17:46294000-46318000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr17:46295800-46314200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr17:46297600-46314400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr17:46301200-46314000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr17:46302600-46315800	Weak transcription	GM12878-XiMat	blood
10	chr17:46302800-46307200	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr17:46302800-46307400	Weak transcription	HUVEC	blood vessel
12	chr17:46303400-46314200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr17:46303600-46306200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr17:46303600-46307600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr17:46304400-46308600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr17:46305200-46317600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr17:46305600-46310800	Strong transcription	Primary T cells from cord blood	blood
18	chr17:46305800-46306400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr17:46305800-46309400	Weak transcription	A549	lung
20	chr17:46306000-46306200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr17:46306000-46306200	Enhancers	K562	blood
22	chr17:46306000-46306600	Enhancers	HUES6 Cell Line	embryonic stem cell

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