Variant report

Variant	rs72827876
Chromosome Location	chr17:46523974-46523975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46518879..46521874-chr17:46522695..46525277,2	K562	blood:
2	chr17:46523948..46525611-chr17:46533793..46535794,2	K562	blood:
3	chr17:46523875..46525523-chr17:46528781..46531393,2	K562	blood:
4	chr17:46509583..46511402-chr17:46522704..46524795,2	K562	blood:
5	chr17:46519655..46521952-chr17:46522773..46525043,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10514938	0.83[AFR][1000 genomes]
rs1472966	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs16953382	0.83[AFR][1000 genomes]
rs16953461	0.83[AFR][1000 genomes]
rs16953925	0.83[AFR][1000 genomes]
rs16954078	0.83[AFR][1000 genomes]
rs16954204	0.83[AFR][1000 genomes]
rs17624626	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17695373	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17696392	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72825584	0.83[AFR][1000 genomes]
rs72827814	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72827830	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72827832	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72827834	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72827839	0.83[AFR][1000 genomes]
rs72827877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827885	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827887	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72827899	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72827901	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv2761960	chr17:46504489-46529846	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46510600-46524000	Enhancers	Primary T cells fromperipheralblood	blood
2	chr17:46512600-46524200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr17:46515800-46524000	Enhancers	Primary B cells from cord blood	blood
4	chr17:46518800-46526200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr17:46519400-46525200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:46519600-46524000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr17:46520600-46530800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr17:46522200-46525800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr17:46522200-46526200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr17:46522400-46524200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr17:46522400-46525400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr17:46522400-46525600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr17:46522400-46526600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr17:46522600-46524200	Enhancers	Primary B cells from peripheral blood	blood
15	chr17:46522800-46524400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr17:46522800-46525200	Enhancers	Primary T cells from cord blood	blood
17	chr17:46523200-46527600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr17:46523400-46528800	Weak transcription	K562	blood
19	chr17:46523600-46529000	Weak transcription	Fetal Thymus	thymus
20	chr17:46523800-46528800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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