Variant report

Variant	rs10742817
Chromosome Location	chr11:47689343-47689344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47662958..47664616-chr11:47688734..47690927,2	K562	blood:
2	chr11:47688686..47691561-chr11:47694165..47696207,2	K562	blood:
3	chr11:16805592..16808015-chr11:47687249..47690117,2	MCF-7	breast:
4	chr11:47687968..47690186-chr11:47718096..47719920,2	K562	blood:

Variant related genes	Relation type
ENSG00000109919	Chromatin interaction
ENSG00000166689	Chromatin interaction

Extended variants
information (count: 148 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs10458915	0.87[ASN][1000 genomes]
rs1056387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10742814	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs10742820	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10742824	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10769285	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769288	0.85[CEU][hapmap];0.94[CHB][hapmap];0.87[TSI][hapmap]
rs10769299	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10769300	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10838726	0.84[JPT][hapmap]
rs10838732	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs10838736	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838739	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838741	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838745	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838746	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838751	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838758	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838759	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838760	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838763	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838766	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838767	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10838768	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838769	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838771	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10838773	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838774	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.87[ASN][1000 genomes]
rs10838775	0.87[ASN][1000 genomes]
rs10838776	0.87[ASN][1000 genomes]
rs10838777	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.87[ASN][1000 genomes]
rs10838782	0.83[ASN][1000 genomes]
rs10838784	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11039280	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs11039329	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11039332	0.95[GIH][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs11039336	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11039337	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11039345	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11039354	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11039373	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039376	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039377	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039379	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039392	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11039401	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039402	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039414	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11039415	0.87[ASN][1000 genomes]
rs11039419	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs11039429	0.87[ASN][1000 genomes]
rs11039431	0.83[ASN][1000 genomes]
rs11039432	0.83[ASN][1000 genomes]
rs12223593	0.80[ASN][1000 genomes]
rs12225854	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12226431	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12226590	0.80[AMR][1000 genomes]
rs12285933	1.00[YRI][hapmap]
rs12286721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360643	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12362318	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12365079	0.86[ASN][1000 genomes]
rs12366244	0.80[EUR][1000 genomes]
rs12421563	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12576933	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12577383	0.80[ASN][1000 genomes]
rs12785949	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1563820	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1563821	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2125838	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2170815	0.87[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.83[ASN][1000 genomes]
rs2203712	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2242081	0.87[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.86[LWK][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs2290851	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28617307	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2869534	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2869541	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2904127	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3740699	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.85[YRI][hapmap]
rs3758655	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3816605	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.87[ASN][1000 genomes]
rs3886262	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4539273	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4543938	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4752792	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752796	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4752798	0.83[ASN][1000 genomes]
rs4752858	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4752860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4752865	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60833259	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61895760	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6485758	0.84[JPT][hapmap]
rs6485763	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6485773	0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6485775	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6485778	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6485786	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7101597	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7102205	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7105791	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107792	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7107922	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7108479	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7110300	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.87[ASN][1000 genomes]
rs7111509	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7111576	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7111606	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7112248	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7114011	0.93[GIH][hapmap];0.89[JPT][hapmap]
rs7114813	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7115228	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7116320	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7116346	0.83[ASN][1000 genomes]
rs7116970	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118747	0.83[ASN][1000 genomes]
rs7120548	0.89[GIH][hapmap];0.84[JPT][hapmap]
rs7122182	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7122217	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7123952	0.87[ASN][1000 genomes]
rs7124396	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7129237	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7129797	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7131262	0.88[JPT][hapmap]
rs754434	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7925211	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7927445	0.93[GIH][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs7929014	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7929725	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7932703	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7933019	0.84[JPT][hapmap]
rs7933184	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7933896	0.83[ASN][1000 genomes]
rs7935344	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7935521	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7935528	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7936948	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7939420	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7941399	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7943213	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7943464	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7945312	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7948468	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7950674	0.87[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.83[ASN][1000 genomes]
rs9633830	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469858	chr11:47647515-47837172	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs10742817	SLC39A13	cis	cerebellum	SCAN
rs10742817	C1QTNF4	cis	multi-tissue	Pritchard
rs10742817	C1QTNF4	cis	lymphoblastoid	seeQTL
rs10742817	NUP160	cis	multi-tissue	Pritchard
rs10742817	SLC35C1	cis	parietal	SCAN
rs10742817	MYBPC3	cis	multi-tissue	Pritchard
rs10742817	CRY2	cis	parietal	SCAN
rs10742817		cis	Lymphoblastoid	GTEx
rs10742817	SPI1	cis	multi-tissue	Pritchard
rs10742817	FNBP4	cis	lesional skin	skin_eQTL
rs10742817	MTCH2	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47676800-47703400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:47687000-47692600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:47687200-47693800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:47688200-47690400	Enhancers	Fetal Lung	lung
5	chr11:47688600-47689400	Enhancers	Ovary	ovary
6	chr11:47688600-47691000	Enhancers	HepG2	liver
7	chr11:47688800-47689400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:47688800-47689400	Strong transcription	Liver	Liver
9	chr11:47689000-47694000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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