Variant report

Variant	rs11039376
Chromosome Location	chr11:47789549-47789550
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:220)
CpG islands
(count:0)
Chromatin interactive
region (count:44)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:220 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:47788123-47790186	GM15510	blood:	n/a	n/a
2	YY1	chr11:47788745-47789586	A549	lung:	n/a	n/a
3	MXI1	chr11:47787886-47789679	GM12878	blood:	n/a	n/a
4	POLR2A	chr11:47789068-47790174	GM12891	blood:	n/a	n/a
5	POLR2A	chr11:47788683-47789685	HepG2	liver:	n/a	n/a
6	MAX	chr11:47788853-47790099	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr11:47788586-47790213	SK-N-MC	brain:	n/a	n/a
8	POLR2A	chr11:47788199-47790455	ProgFib	skin:	n/a	n/a
9	POLR2A	chr11:47787940-47790406	PANC-1	pancreas:	n/a	n/a
10	MYC	chr11:47787804-47789636	K562	blood:	n/a	n/a
11	NFYA	chr11:47788790-47790192	Hela-S3	cervix:	n/a	chr11:47789109-47789123
12	POLR2A	chr11:47788197-47789747	ECC-1	luminal epithelium:	n/a	n/a
13	POLR2A	chr11:47787930-47790254	K562	blood:	n/a	n/a
14	POLR2A	chr11:47788008-47790073	K562	blood:	n/a	n/a
15	E2F4	chr11:47788742-47789586	MCF10A-Er-Src	breast:	n/a	chr11:47789000-47789009 chr11:47789078-47789087 chr11:47788994-47789003
16	POLR2A	chr11:47788068-47790167	GM12878	blood:	n/a	n/a
17	POLR2A	chr11:47788590-47790242	HepG2	liver:	n/a	n/a
18	YY1	chr11:47788404-47789729	ECC-1	luminal epithelium:	n/a	chr11:47788479-47788493
19	POLR2A	chr11:47789503-47790222	HUVEC	blood vessel:	n/a	n/a
20	GTF2F1	chr11:47788738-47790210	Hela-S3	cervix:	n/a	n/a
21	YY1	chr11:47788121-47789721	GM12878	blood:	n/a	chr11:47788479-47788493
22	MXI1	chr11:47788655-47789679	K562	blood:	n/a	n/a
23	PML	chr11:47789079-47789665	GM12878	blood:	n/a	n/a
24	MYBL2	chr11:47788550-47789610	HepG2	liver:	n/a	n/a
25	POLR2A	chr11:47788602-47790344	SK-N-SH	brain:	n/a	n/a
26	POLR2A	chr11:47787891-47790217	HL-60	blood:	n/a	n/a
27	MYC	chr11:47787921-47790016	NB4	blood:	n/a	n/a
28	CHD2	chr11:47788094-47790244	Hela-S3	cervix:	n/a	n/a
29	RELA	chr11:47788154-47789905	GM15510	blood:	n/a	n/a
30	YY1	chr11:47788234-47789687	HepG2	liver:	n/a	chr11:47788479-47788493
31	CEBPB	chr11:47788619-47790126	GM12878	blood:	n/a	chr11:47789078-47789086
32	POLR2A	chr11:47787975-47790174	GM18526	blood:	n/a	n/a
33	POLR2A	chr11:47787979-47790174	GM12892	blood:	n/a	n/a
34	REST	chr11:47787989-47790138	HL-60	blood:	n/a	n/a
35	RUNX3	chr11:47787924-47789852	GM12878	blood:	n/a	n/a
36	POLR2A	chr11:47787648-47790388	H1-hESC	embryonic stem cell:	n/a	n/a
37	POLR2A	chr11:47787706-47790235	Hela-S3	cervix:	n/a	n/a
38	POLR2A	chr11:47788474-47790286	U87	brain:	n/a	n/a
39	NFIC	chr11:47787814-47789977	GM12878	blood:	n/a	n/a
40	MAX	chr11:47787841-47789565	HepG2	liver:	n/a	n/a
41	POLR2A	chr11:47787950-47789695	K562	blood:	n/a	n/a
42	TBP	chr11:47788123-47790230	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr11:47788073-47790175	NB4	blood:	n/a	n/a
44	POLR2A	chr11:47787840-47790326	GM12891	blood:	n/a	n/a
45	POLR2A	chr11:47788654-47790171	K562	blood:	n/a	n/a
46	PML	chr11:47787738-47790407	GM12878	blood:	n/a	n/a
47	MAX	chr11:47787418-47790406	A549	lung:	n/a	n/a
48	BCL3	chr11:47788687-47790135	A549	lung:	n/a	chr11:47789184-47789193
49	MAZ	chr11:47787992-47790204	Hela-S3	cervix:	n/a	n/a
50	TAF1	chr11:47789452-47790196	Hela-S3	cervix:	n/a	n/a

No data

(count:44 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:47789301..47790023-chr5:87564142..87564851,2	Hela-S3	cervix:
2	chr11:47789016..47789574-chr21:27107910..27108858,2	Hela-S3	cervix:
3	chr11:47788965..47789567-chr11:61559646..61560328,2	Hela-S3	cervix:
4	chr11:47789233..47789866-chr12:118810319..118811021,2	Hela-S3	cervix:
5	chr11:47788484..47791292-chr11:47808124..47811253,3	K562	blood:
6	chr11:47789417..47789936-chr22:51021378..51021943,2	Hela-S3	cervix:
7	chr11:47789438..47790075-chr16:89894310..89894977,2	Hela-S3	cervix:
8	chr11:47662615..47664358-chr11:47788211..47790386,2	K562	blood:
9	chr1:144533749..144534342-chr11:47789058..47790115,3	Hela-S3	cervix:
10	chr11:47789485..47790040-chr19:7933951..7934581,2	Hela-S3	cervix:
11	chr11:47766940..47769464-chr11:47787267..47790011,2	MCF-7	breast:
12	chr1:171454396..171455118-chr11:47789379..47790101,2	Hela-S3	cervix:
13	chr11:47789295..47790171-chrX:17755331..17755908,2	Hela-S3	cervix:
14	chr11:47663509..47666496-chr11:47787150..47790595,4	MCF-7	breast:
15	chr11:47789135..47789999-chr12:58329501..58330067,2	Hela-S3	cervix:
16	chr11:47771480..47774571-chr11:47789058..47790932,3	MCF-7	breast:
17	chr11:47789021..47789773-chr5:79950644..79951255,2	Hela-S3	cervix:
18	chr11:47573610..47575378-chr11:47787922..47789822,2	MCF-7	breast:
19	chr11:47789170..47789888-chr12:53298260..53298941,2	Hela-S3	cervix:
20	chr11:47789006..47791517-chr11:47814030..47815802,2	MCF-7	breast:
21	chr11:47787149..47790720-chr11:47868235..47871590,6	MCF-7	breast:
22	chr11:47787985..47790114-chr11:47808170..47811133,3	MCF-7	breast:
23	chr11:47662615..47665881-chr11:47786940..47791485,8	K562	blood:
24	chr11:47789190..47789714-chr6:20402096..20403087,2	Hela-S3	cervix:
25	chr11:47789131..47789745-chr11:67272185..67272828,2	Hela-S3	cervix:
26	chr11:47733919..47739426-chr11:47787626..47790588,5	MCF-7	breast:
27	chr11:47788029..47790788-chr11:47839875..47842622,2	MCF-7	breast:
28	chr11:47788106..47790225-chr11:47868385..47869954,2	K562	blood:
29	chr11:47787574..47789609-chr11:47817682..47819255,2	MCF-7	breast:
30	chr11:47789488..47790302-chr16:30662269..30663238,2	HCT-116	colon:
31	chr11:47789258..47792830-chr11:47805227..47807948,3	K562	blood:
32	chr11:47776501..47778093-chr11:47789234..47791765,2	MCF-7	breast:
33	chr11:47745878..47748144-chr11:47788174..47790668,2	MCF-7	breast:
34	chr11:47293111..47295014-chr11:47788351..47790710,2	MCF-7	breast:
35	chr11:47789097..47789921-chr2:48010608..48011398,2	Hela-S3	cervix:
36	chr11:47789435..47790104-chr12:12711774..12712638,2	Hela-S3	cervix:
37	chr11:47789202..47790166-chr6:35466912..35467692,2	Hela-S3	cervix:
38	chr11:47787394..47789838-chr11:47868299..47871448,5	MCF-7	breast:
39	chr11:47789245..47790161-chr16:691677..692442,2	Hela-S3	cervix:
40	chr1:149859555..149860199-chr11:47789259..47789971,2	Hela-S3	cervix:
41	chr11:47429560..47431457-chr11:47788267..47789854,2	MCF-7	breast:
42	chr11:47789201..47789836-chr11:47869226..47869994,2	Hela-S3	cervix:
43	chr11:47736234..47739669-chr11:47788606..47790744,3	MCF-7	breast:
44	chr11:47603018..47605507-chr11:47787325..47789892,2	K562	blood:

No data

Variant related genes	Relation type
FNBP4	TF binding region
ENSG00000255197	Chromatin interaction
ENSG00000116062	Chromatin interaction
ENSG00000204991	Chromatin interaction
ENSG00000164180	Chromatin interaction
ENSG00000172366	Chromatin interaction
ENSG00000135090	Chromatin interaction
ENSG00000247828	Chromatin interaction
ENSG00000110514	Chromatin interaction
ENSG00000113318	Chromatin interaction
ENSG00000207601	Chromatin interaction
ENSG00000149187	Chromatin interaction
ENSG00000271543	Chromatin interaction
ENSG00000197727	Chromatin interaction
ENSG00000030066	Chromatin interaction
ENSG00000201699	Chromatin interaction
ENSG00000047634	Chromatin interaction
ENSG00000100288	Chromatin interaction
ENSG00000205559	Chromatin interaction
ENSG00000213619	Chromatin interaction
ENSG00000254413	Chromatin interaction
ENSG00000252874	Chromatin interaction
ENSG00000170421	Chromatin interaction
ENSG00000168496	Chromatin interaction
ENSG00000156858	Chromatin interaction
ENSG00000109919	Chromatin interaction
ENSG00000228716	Chromatin interaction
ENSG00000165915	Chromatin interaction
ENSG00000110697	Chromatin interaction
ENSG00000112242	Chromatin interaction
ENSG00000154723	Chromatin interaction
ENSG00000117523	Chromatin interaction
ENSG00000257698	Chromatin interaction
ENSG00000109920	Chromatin interaction
ENSG00000134825	Chromatin interaction
ENSG00000165923	Chromatin interaction
ENSG00000256746	Chromatin interaction

Extended variants
information (count: 143 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10458914	0.82[ASN][1000 genomes]
rs10458915	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1056387	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10742817	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10742820	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742824	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769285	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769299	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769300	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838736	0.90[ASN][1000 genomes]
rs10838739	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838740	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838741	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838745	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10838746	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838751	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838758	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838759	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838760	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838763	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10838766	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838767	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838768	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838769	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838771	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838773	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838774	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838775	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838776	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838777	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838782	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838784	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838786	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11039329	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11039336	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039337	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039345	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039354	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11039373	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11039377	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039379	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039392	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11039398	0.81[ASN][1000 genomes]
rs11039401	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11039402	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11039414	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11039415	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11039419	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11039429	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11039431	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039432	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039434	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12223593	0.85[ASN][1000 genomes]
rs12225854	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12226431	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12286721	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12360643	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12362318	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12366244	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12421563	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576933	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12577383	0.85[ASN][1000 genomes]
rs12785949	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1471712	0.83[ASN][1000 genomes]
rs1563820	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1563821	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2046377	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2125838	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2170815	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2290851	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28617307	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2869534	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2869541	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2904127	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3758655	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3816605	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3886262	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4539273	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4543938	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752792	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4752796	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4752798	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752858	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4752860	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4752865	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60833259	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895760	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6485763	0.87[ASN][1000 genomes]
rs6485773	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485775	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485778	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485786	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7101597	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7102205	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7105791	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7107792	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7107922	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7108479	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110300	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7111509	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7111576	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7111606	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7112248	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7114011	0.82[ASN][1000 genomes]
rs7114813	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7115228	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7116320	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7116346	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7116970	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7118747	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7121038	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7122182	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7122217	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7123952	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7124396	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7129237	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7129797	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7131262	0.82[ASN][1000 genomes]
rs754434	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7925211	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927445	0.85[ASN][1000 genomes]
rs7929014	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929725	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7932703	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933184	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7933896	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7935344	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7935521	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7935528	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7936948	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7939420	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7941399	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7943213	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7943464	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7944084	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7945312	0.90[ASN][1000 genomes]
rs7948468	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7950674	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9633830	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469858	chr11:47647515-47837172	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
3	nsv832143	chr11:47700808-47883540	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11039376	FNBP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47786400-47790200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:47786600-47789800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:47786600-47790000	Active TSS	H1 Cell Line	embryonic stem cell
4	chr11:47786600-47790000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:47786600-47790000	Active TSS	Fetal Kidney	kidney
6	chr11:47786600-47790000	Active TSS	GM12878-XiMat	blood
7	chr11:47786800-47789600	Active TSS	Duodenum Mucosa	Duodenum
8	chr11:47786800-47789600	Active TSS	Stomach Smooth Muscle	stomach
9	chr11:47786800-47789800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:47786800-47789800	Active TSS	A549	lung
11	chr11:47786800-47789800	Active TSS	K562	blood
12	chr11:47786800-47790000	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr11:47786800-47790000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:47786800-47790000	Active TSS	Brain Germinal Matrix	brain
15	chr11:47786800-47790200	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr11:47786800-47790200	Active TSS	Right Atrium	heart
17	chr11:47786800-47790400	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr11:47787000-47789600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:47787000-47789600	Active TSS	Hela-S3	cervix
20	chr11:47787000-47789600	Active TSS	HMEC	breast
21	chr11:47787000-47789600	Active TSS	Osteobl	bone
22	chr11:47787000-47789800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:47787000-47789800	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr11:47787000-47790000	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr11:47787000-47790000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:47787000-47790000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:47787000-47790200	Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr11:47787000-47790400	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr11:47787000-47790400	Active TSS	HSMM	muscle
30	chr11:47787200-47789800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:47787200-47789800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:47787200-47790000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:47787200-47790000	Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr11:47787200-47790000	Active TSS	Left Ventricle	heart
35	chr11:47787200-47790200	Active TSS	H9 Cell Line	embryonic stem cell
36	chr11:47787200-47790200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr11:47787200-47790200	Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr11:47787200-47790200	Active TSS	Right Ventricle	heart
39	chr11:47787400-47789600	Active TSS	Liver	Liver
40	chr11:47787400-47789600	Active TSS	Fetal Intestine Large	intestine
41	chr11:47787400-47789600	Active TSS	Fetal Lung	lung
42	chr11:47787400-47789600	Active TSS	Lung	lung
43	chr11:47787400-47789600	Active TSS	Placenta Amnion	Placenta Amnion
44	chr11:47787400-47789600	Active TSS	Small Intestine	intestine
45	chr11:47787400-47789600	Active TSS	NHEK	skin
46	chr11:47787400-47789800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:47787400-47789800	Active TSS	Ovary	ovary
48	chr11:47787400-47789800	Active TSS	Sigmoid Colon	Sigmoid Colon
49	chr11:47787400-47790000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:47787400-47790000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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