Variant report

Variant	rs7950674
Chromosome Location	chr11:47871017-47871018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr11:47868287-47871109	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr11:47869288-47871105	GM12891	blood:	n/a	n/a
3	MTA3	chr11:47869270-47871037	GM12878	blood:	n/a	n/a
4	POLR2A	chr11:47868316-47871021	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr11:47870990-47871069	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:47734421..47738084-chr11:47868728..47871724,4	K562	blood:
2	chr11:47787394..47789838-chr11:47868299..47871448,5	MCF-7	breast:
3	chr11:47597915..47601799-chr11:47868286..47871887,4	K562	blood:
4	chr11:47870685..47873439-chr11:47876355..47879304,2	MCF-7	breast:
5	chr11:47787149..47790720-chr11:47868235..47871590,6	MCF-7	breast:
6	chr11:47599594..47601938-chr11:47869864..47871887,2	K562	blood:
7	chr11:47870211..47871042-chr3:180319722..180320451,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
NUP160	TF binding region
ENSG00000123444	Chromatin interaction
ENSG00000239774	Chromatin interaction
ENSG00000165923	Chromatin interaction
ENSG00000231880	Chromatin interaction
ENSG00000109920	Chromatin interaction
ENSG00000200376	Chromatin interaction
ENSG00000213619	Chromatin interaction
ENSG00000163728	Chromatin interaction

Extended variants
information (count: 145 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10458914	0.80[ASN][1000 genomes]
rs10458915	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1056387	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.84[ASN][1000 genomes]
rs10742817	0.87[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.83[ASN][1000 genomes]
rs10742820	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10742824	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10769285	0.84[ASN][1000 genomes]
rs10769288	0.87[ASW][hapmap];0.85[CEU][hapmap];0.85[CHB][hapmap]
rs10769299	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10769300	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838736	0.81[ASN][1000 genomes]
rs10838739	0.83[ASN][1000 genomes]
rs10838740	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.86[ASN][1000 genomes]
rs10838741	0.80[ASN][1000 genomes]
rs10838746	0.89[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.84[ASN][1000 genomes]
rs10838751	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10838758	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838759	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838760	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838763	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10838766	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838767	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10838768	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838769	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838771	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838773	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838774	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838775	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838776	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838777	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838782	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838784	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10838786	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039329	0.89[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.86[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.85[ASN][1000 genomes]
rs11039332	0.91[GIH][hapmap];0.84[JPT][hapmap]
rs11039336	0.81[ASN][1000 genomes]
rs11039337	0.84[ASN][1000 genomes]
rs11039345	0.89[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11039354	0.80[EUR][1000 genomes]
rs11039373	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039376	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039377	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039379	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039392	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039401	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039402	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039414	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039415	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11039419	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11039429	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11039431	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11039432	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11039434	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11039467	0.83[JPT][hapmap]
rs12225854	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12226431	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12286721	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes]
rs12360643	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12362318	0.83[ASN][1000 genomes]
rs12366244	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12421563	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12576933	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12785949	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1471712	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1563820	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1563821	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2046377	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2125838	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2170815	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2290851	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28617307	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2869534	0.83[EUR][1000 genomes]
rs2869541	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2904127	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3758655	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs3816605	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3886262	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4539273	0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.83[ASN][1000 genomes]
rs4543938	0.81[ASN][1000 genomes]
rs4752792	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4752796	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4752798	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4752858	0.85[ASN][1000 genomes]
rs4752860	1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.84[ASN][1000 genomes]
rs4752865	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60833259	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61895760	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6485773	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6485775	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6485778	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6485786	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6485794	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6485795	0.93[GIH][hapmap];0.83[JPT][hapmap]
rs7101597	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7102205	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7105791	0.83[ASN][1000 genomes]
rs7107792	0.83[ASN][1000 genomes]
rs7107922	0.83[ASN][1000 genomes]
rs7108479	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7110300	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7111509	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7111576	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7111606	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7112248	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7114011	0.93[GIH][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs7114813	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7115228	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7116320	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7116346	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7116970	0.83[ASN][1000 genomes]
rs7118747	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7121038	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7122182	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7122217	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7123952	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7124396	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7129237	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7129797	0.83[ASN][1000 genomes]
rs7131262	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs754434	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7925211	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7927445	0.93[GIH][hapmap];0.84[JPT][hapmap]
rs7929014	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7929725	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7930612	1.00[YRI][hapmap]
rs7932703	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7933184	0.83[ASN][1000 genomes]
rs7933896	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7935521	0.84[ASN][1000 genomes]
rs7935528	0.82[ASN][1000 genomes]
rs7936948	0.89[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.84[ASN][1000 genomes]
rs7939420	0.96[CEU][hapmap];0.84[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7941399	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7943213	0.84[ASN][1000 genomes]
rs7943464	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7944084	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7945312	0.81[ASN][1000 genomes]
rs7948468	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9633830	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv832143	chr11:47700808-47883540	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
4	nsv1036992	chr11:47794621-48666024	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv1049835	chr11:47837089-47928822	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv541036	chr11:47837089-47928822	Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7950674	MTCH2	cis	cerebellum	SCAN
rs7950674	SLC39A13	cis	cerebellum	SCAN
rs7950674	C1QTNF4	cis	lymphoblastoid	seeQTL
rs7950674	SLC35C1	cis	parietal	SCAN
rs7950674	FNBP4	Cis_1M	lymphoblastoid	RTeQTL
rs7950674	CRY2	cis	parietal	SCAN

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47870400-47871800	Enhancers	Spleen	Spleen
2	chr11:47870600-47871600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:47870600-47873400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:47870600-47873400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:47870600-47875200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:47870600-47877400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:47870600-47879600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:47870600-47885400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:47870800-47871200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:47870800-47871200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr11:47870800-47871200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:47870800-47871200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:47870800-47871800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:47870800-47871800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:47870800-47871800	Enhancers	GM12878-XiMat	blood
16	chr11:47870800-47872200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:47870800-47872200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:47870800-47872200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:47870800-47872200	Enhancers	NHEK	skin
20	chr11:47870800-47873000	Enhancers	Primary hematopoietic stem cells	blood
21	chr11:47870800-47873000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr11:47870800-47873200	Enhancers	Primary T cells fromperipheralblood	blood
23	chr11:47870800-47873200	Enhancers	Fetal Thymus	thymus
24	chr11:47870800-47873400	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr11:47870800-47873600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr11:47870800-47873800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:47870800-47875200	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr11:47870800-47877600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:47870800-47877800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr11:47870800-47877800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:47870800-47879200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:47870800-47879800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:47870800-47889400	Enhancers	Primary B cells from peripheral blood	blood
34	chr11:47871000-47871400	Weak transcription	Thymus	Thymus
35	chr11:47871000-47871400	Weak transcription	NHLF	lung
36	chr11:47871000-47871800	Enhancers	Primary B cells from cord blood	blood
37	chr11:47871000-47871800	Enhancers	Primary T cells from cord blood	blood
38	chr11:47871000-47871800	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr11:47871000-47872000	Weak transcription	HMEC	breast
40	chr11:47871000-47872200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr11:47871000-47872800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:47871000-47872800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:47871000-47872800	Enhancers	Dnd41	blood
44	chr11:47871000-47873200	Weak transcription	A549	lung
45	chr11:47871000-47873200	Weak transcription	Hela-S3	cervix
46	chr11:47871000-47873200	Weak transcription	HepG2	liver
47	chr11:47871000-47873400	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr11:47871000-47873600	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr11:47871000-47873600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr11:47871000-47875200	Weak transcription	Duodenum Mucosa	Duodenum

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