Variant report

Variant	rs10838741
Chromosome Location	chr11:47683765-47683766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47683244..47686063-chr11:47689712..47691383,2	K562	blood:
2	chr11:47682501..47684433-chr11:47731729..47733757,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165923	Chromatin interaction

Extended variants
information (count: 119 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10458915	0.84[ASN][1000 genomes]
rs1056387	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10742817	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10742820	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10742824	0.84[ASN][1000 genomes]
rs10769285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769299	0.84[ASN][1000 genomes]
rs10769300	0.84[ASN][1000 genomes]
rs10838732	0.87[AMR][1000 genomes]
rs10838736	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10838739	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10838740	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838745	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10838746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838751	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10838758	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838759	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838760	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838763	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10838766	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10838767	0.84[ASN][1000 genomes]
rs10838768	0.87[ASN][1000 genomes]
rs10838769	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10838771	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10838773	0.87[ASN][1000 genomes]
rs10838774	0.84[ASN][1000 genomes]
rs10838775	0.84[ASN][1000 genomes]
rs10838776	0.84[ASN][1000 genomes]
rs10838777	0.84[ASN][1000 genomes]
rs11039329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11039332	0.80[ASN][1000 genomes]
rs11039336	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039345	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039354	0.84[EUR][1000 genomes]
rs11039373	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11039376	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039377	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039379	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039392	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11039401	0.87[ASN][1000 genomes]
rs11039402	0.87[ASN][1000 genomes]
rs11039414	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11039415	0.84[ASN][1000 genomes]
rs11039419	0.84[ASN][1000 genomes]
rs11039429	0.84[ASN][1000 genomes]
rs12225854	0.84[ASN][1000 genomes]
rs12226431	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12226590	0.81[AMR][1000 genomes]
rs12286721	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12360643	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12362318	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12365079	0.80[ASN][1000 genomes]
rs12421563	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12785949	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1563820	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1563821	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2125838	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2290851	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28617307	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2869534	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2869541	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2904127	0.87[ASN][1000 genomes]
rs3758655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3816605	0.84[ASN][1000 genomes]
rs3886262	0.87[ASN][1000 genomes]
rs4539273	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4543938	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4752792	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4752796	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4752858	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4752860	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4752865	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60833259	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61895760	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6485763	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6485773	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6485775	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6485778	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6485786	0.87[ASN][1000 genomes]
rs7101597	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7102205	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7105791	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7107792	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7107922	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7108479	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7110300	0.84[ASN][1000 genomes]
rs7111509	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7111576	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7111606	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7112248	0.82[ASN][1000 genomes]
rs7114813	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7115228	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7116320	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7116970	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7122182	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7122217	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7123952	0.84[ASN][1000 genomes]
rs7124396	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7126378	0.80[AMR][1000 genomes]
rs7129237	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7129797	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs754434	0.87[ASN][1000 genomes]
rs7925211	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7929014	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7932703	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7933184	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7935344	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7935521	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7935528	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7936948	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7939420	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7943213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7945312	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7948468	0.85[ASN][1000 genomes]
rs7950674	0.80[ASN][1000 genomes]
rs9633830	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469858	chr11:47647515-47837172	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10838741	FNBP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47676800-47703400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:47682000-47688600	Weak transcription	HepG2	liver
3	chr11:47683200-47688200	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links