Variant report

Variant	rs11039377
Chromosome Location	chr11:47789776-47789777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:213)
CpG islands
(count:0)
Chromatin interactive
region (count:39)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:213 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:47788123-47790186	GM15510	blood:	n/a	n/a
2	REST	chr11:47789757-47790092	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr11:47789068-47790174	GM12891	blood:	n/a	n/a
4	MAX	chr11:47788853-47790099	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr11:47788586-47790213	SK-N-MC	brain:	n/a	n/a
6	POLR2A	chr11:47788199-47790455	ProgFib	skin:	n/a	n/a
7	POLR2A	chr11:47787940-47790406	PANC-1	pancreas:	n/a	n/a
8	CEBPB	chr11:47789569-47790509	A549	lung:	n/a	n/a
9	NFYA	chr11:47788790-47790192	Hela-S3	cervix:	n/a	chr11:47789109-47789123
10	POLR2A	chr11:47787930-47790254	K562	blood:	n/a	n/a
11	RAD21	chr11:47789723-47790217	Hela-S3	cervix:	n/a	n/a
12	STAT3	chr11:47789647-47790154	MCF10A-Er-Src	breast:	n/a	chr11:47790049-47790061
13	TAF1	chr11:47789683-47790175	H1-neurons	neurons:	n/a	n/a
14	POLR2A	chr11:47788008-47790073	K562	blood:	n/a	n/a
15	TCF12	chr11:47789736-47790116	GM12878	blood:	n/a	n/a
16	POLR2A	chr11:47788068-47790167	GM12878	blood:	n/a	n/a
17	POLR2A	chr11:47788590-47790242	HepG2	liver:	n/a	n/a
18	POLR2A	chr11:47789503-47790222	HUVEC	blood vessel:	n/a	n/a
19	GTF2F1	chr11:47788738-47790210	Hela-S3	cervix:	n/a	n/a
20	POLR2A	chr11:47789751-47790139	GM12878	blood:	n/a	n/a
21	POLR2A	chr11:47788602-47790344	SK-N-SH	brain:	n/a	n/a
22	TAF1	chr11:47789715-47790125	SK-N-SH	brain:	n/a	n/a
23	POLR2A	chr11:47787891-47790217	HL-60	blood:	n/a	n/a
24	MYC	chr11:47787921-47790016	NB4	blood:	n/a	n/a
25	CHD2	chr11:47788094-47790244	Hela-S3	cervix:	n/a	n/a
26	RELA	chr11:47788154-47789905	GM15510	blood:	n/a	n/a
27	MAX	chr11:47789734-47790294	Hela-S3	cervix:	n/a	n/a
28	CEBPB	chr11:47788619-47790126	GM12878	blood:	n/a	chr11:47789078-47789086
29	CTCF	chr11:47789760-47789910	AG10803	skin:	n/a	n/a
30	POLR2A	chr11:47787975-47790174	GM18526	blood:	n/a	n/a
31	USF1	chr11:47789758-47790188	A549	lung:	n/a	n/a
32	POLR2A	chr11:47787979-47790174	GM12892	blood:	n/a	n/a
33	REST	chr11:47787989-47790138	HL-60	blood:	n/a	n/a
34	RUNX3	chr11:47787924-47789852	GM12878	blood:	n/a	n/a
35	POLR2A	chr11:47787648-47790388	H1-hESC	embryonic stem cell:	n/a	n/a
36	POLR2A	chr11:47787706-47790235	Hela-S3	cervix:	n/a	n/a
37	SIN3AK20	chr11:47789701-47790189	SK-N-SH	brain:	n/a	n/a
38	POLR2A	chr11:47788474-47790286	U87	brain:	n/a	n/a
39	NFIC	chr11:47787814-47789977	GM12878	blood:	n/a	n/a
40	POLR2A	chr11:47789738-47790135	H1-hESC	embryonic stem cell:	n/a	n/a
41	TBP	chr11:47788123-47790230	H1-hESC	embryonic stem cell:	n/a	n/a
42	POLR2A	chr11:47788073-47790175	NB4	blood:	n/a	n/a
43	USF1	chr11:47789582-47790251	HCT-116	colon:	n/a	n/a
44	POLR2A	chr11:47787840-47790326	GM12891	blood:	n/a	n/a
45	MAX	chr11:47789657-47790136	NB4	blood:	n/a	n/a
46	POLR2A	chr11:47788654-47790171	K562	blood:	n/a	n/a
47	SIN3AK20	chr11:47789747-47790111	A549	lung:	n/a	n/a
48	PML	chr11:47787738-47790407	GM12878	blood:	n/a	n/a
49	MAX	chr11:47787418-47790406	A549	lung:	n/a	n/a
50	MYC	chr11:47789707-47790259	Hela-S3	cervix:	n/a	n/a

No data

(count:39 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:47789301..47790023-chr5:87564142..87564851,2	Hela-S3	cervix:
2	chr11:47789233..47789866-chr12:118810319..118811021,2	Hela-S3	cervix:
3	chr11:47788484..47791292-chr11:47808124..47811253,3	K562	blood:
4	chr11:47789417..47789936-chr22:51021378..51021943,2	Hela-S3	cervix:
5	chr11:47789438..47790075-chr16:89894310..89894977,2	Hela-S3	cervix:
6	chr11:47662615..47664358-chr11:47788211..47790386,2	K562	blood:
7	chr1:144533749..144534342-chr11:47789058..47790115,3	Hela-S3	cervix:
8	chr11:47789485..47790040-chr19:7933951..7934581,2	Hela-S3	cervix:
9	chr11:47766940..47769464-chr11:47787267..47790011,2	MCF-7	breast:
10	chr1:171454396..171455118-chr11:47789379..47790101,2	Hela-S3	cervix:
11	chr11:47789295..47790171-chrX:17755331..17755908,2	Hela-S3	cervix:
12	chr11:47663509..47666496-chr11:47787150..47790595,4	MCF-7	breast:
13	chr11:47789135..47789999-chr12:58329501..58330067,2	Hela-S3	cervix:
14	chr11:47771480..47774571-chr11:47789058..47790932,3	MCF-7	breast:
15	chr11:47573610..47575378-chr11:47787922..47789822,2	MCF-7	breast:
16	chr11:47789170..47789888-chr12:53298260..53298941,2	Hela-S3	cervix:
17	chr11:47789006..47791517-chr11:47814030..47815802,2	MCF-7	breast:
18	chr11:47787149..47790720-chr11:47868235..47871590,6	MCF-7	breast:
19	chr11:47787985..47790114-chr11:47808170..47811133,3	MCF-7	breast:
20	chr11:47662615..47665881-chr11:47786940..47791485,8	K562	blood:
21	chr11:47789580..47790623-chr7:130791883..130792873,3	Hela-S3	cervix:
22	chr11:47733919..47739426-chr11:47787626..47790588,5	MCF-7	breast:
23	chr11:47788029..47790788-chr11:47839875..47842622,2	MCF-7	breast:
24	chr11:47788106..47790225-chr11:47868385..47869954,2	K562	blood:
25	chr11:47789488..47790302-chr16:30662269..30663238,2	HCT-116	colon:
26	chr11:47789258..47792830-chr11:47805227..47807948,3	K562	blood:
27	chr11:47776501..47778093-chr11:47789234..47791765,2	MCF-7	breast:
28	chr11:47745878..47748144-chr11:47788174..47790668,2	MCF-7	breast:
29	chr11:47293111..47295014-chr11:47788351..47790710,2	MCF-7	breast:
30	chr11:47789097..47789921-chr2:48010608..48011398,2	Hela-S3	cervix:
31	chr11:47789435..47790104-chr12:12711774..12712638,2	Hela-S3	cervix:
32	chr11:47789202..47790166-chr6:35466912..35467692,2	Hela-S3	cervix:
33	chr11:47787394..47789838-chr11:47868299..47871448,5	MCF-7	breast:
34	chr11:47789245..47790161-chr16:691677..692442,2	Hela-S3	cervix:
35	chr1:149859555..149860199-chr11:47789259..47789971,2	Hela-S3	cervix:
36	chr11:47429560..47431457-chr11:47788267..47789854,2	MCF-7	breast:
37	chr11:47789201..47789836-chr11:47869226..47869994,2	Hela-S3	cervix:
38	chr11:47736234..47739669-chr11:47788606..47790744,3	MCF-7	breast:
39	chr11:47603018..47605507-chr11:47787325..47789892,2	K562	blood:

No data

Variant related genes	Relation type
FNBP4	TF binding region
ENSG00000164180	Chromatin interaction
ENSG00000109920	Chromatin interaction
ENSG00000254413	Chromatin interaction
ENSG00000030066	Chromatin interaction
ENSG00000149187	Chromatin interaction
ENSG00000213619	Chromatin interaction
ENSG00000257698	Chromatin interaction
ENSG00000165923	Chromatin interaction
ENSG00000204991	Chromatin interaction
ENSG00000255197	Chromatin interaction
ENSG00000256746	Chromatin interaction
ENSG00000205559	Chromatin interaction
ENSG00000252874	Chromatin interaction
ENSG00000110514	Chromatin interaction
ENSG00000100288	Chromatin interaction
ENSG00000116062	Chromatin interaction
ENSG00000201699	Chromatin interaction
ENSG00000047634	Chromatin interaction
ENSG00000165915	Chromatin interaction
ENSG00000197727	Chromatin interaction
ENSG00000156858	Chromatin interaction
ENSG00000172366	Chromatin interaction
ENSG00000170421	Chromatin interaction
ENSG00000231721	Chromatin interaction
ENSG00000247828	Chromatin interaction
ENSG00000135090	Chromatin interaction
ENSG00000109919	Chromatin interaction
ENSG00000117523	Chromatin interaction

Extended variants
information (count: 149 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs10458914	0.82[ASN][1000 genomes]
rs10458915	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1056387	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10742817	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10742820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769285	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769288	0.87[ASW][hapmap];0.85[CEU][hapmap];0.89[CHB][hapmap]
rs10769299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838732	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap]
rs10838736	0.90[ASN][1000 genomes]
rs10838739	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838740	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838741	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838745	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10838746	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838751	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838760	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10838766	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838767	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838768	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838769	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838771	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838774	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838775	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838776	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838777	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838782	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838784	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838786	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11039329	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11039332	0.93[GIH][hapmap];0.94[JPT][hapmap]
rs11039336	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039337	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039345	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039354	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11039373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11039376	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11039398	0.81[ASN][1000 genomes]
rs11039401	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11039402	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11039414	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11039415	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11039419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11039429	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11039431	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039432	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039434	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12223593	0.85[ASN][1000 genomes]
rs12225854	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12226431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12286721	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12360643	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12362318	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12366244	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12421563	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576933	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12577383	0.85[ASN][1000 genomes]
rs12785949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1471712	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1563820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1563821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2046377	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2125838	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2170815	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2290851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28617307	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2869534	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2869541	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2904127	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3758655	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3816605	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3886262	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4539273	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4543938	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752792	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4752796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4752798	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752858	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4752860	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4752865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60833259	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61895760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6485763	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.82[TSI][hapmap];0.87[ASN][1000 genomes]
rs6485773	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485778	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485786	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6485795	0.91[GIH][hapmap]
rs7101597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7102205	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7105791	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7107792	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7107922	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7108479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110300	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7111509	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7111576	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7111606	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7112248	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7114011	0.95[GIH][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs7114813	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7115228	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7116320	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7116346	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7116970	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7118747	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7120548	0.87[GIH][hapmap];0.89[JPT][hapmap]
rs7121038	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7122182	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7122217	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7123952	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7124396	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7129237	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7129797	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7131262	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs754434	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7925211	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927445	0.95[GIH][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7929014	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929725	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7930612	0.88[YRI][hapmap]
rs7932703	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933184	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7933896	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7935344	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7935521	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7935528	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7936948	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7939420	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7941399	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7943213	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7943464	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7944084	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7945312	0.90[ASN][1000 genomes]
rs7948468	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7950674	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9633830	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469858	chr11:47647515-47837172	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
3	nsv832143	chr11:47700808-47883540	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs11039377	SLC39A13	cis	cerebellum	SCAN
rs11039377	FNBP4	cis	lesional skin	skin_eQTL
rs11039377	FNBP4	Cis_1M	lymphoblastoid	RTeQTL
rs11039377		cis	Lymphoblastoid	GTEx
rs11039377	Hs.6637	cis	multi-tissue	Pritchard
rs11039377	C1QTNF4	cis	lymphoblastoid	seeQTL
rs11039377	SLC35C1	cis	parietal	SCAN
rs11039377	MTCH2	cis	cerebellum	SCAN
rs11039377	CRY2	cis	parietal	SCAN
rs11039377	C1QTNF4	cis	multi-tissue	Pritchard

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47786400-47790200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:47786600-47789800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:47786600-47790000	Active TSS	H1 Cell Line	embryonic stem cell
4	chr11:47786600-47790000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:47786600-47790000	Active TSS	Fetal Kidney	kidney
6	chr11:47786600-47790000	Active TSS	GM12878-XiMat	blood
7	chr11:47786800-47789800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:47786800-47789800	Active TSS	A549	lung
9	chr11:47786800-47789800	Active TSS	K562	blood
10	chr11:47786800-47790000	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr11:47786800-47790000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:47786800-47790000	Active TSS	Brain Germinal Matrix	brain
13	chr11:47786800-47790200	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr11:47786800-47790200	Active TSS	Right Atrium	heart
15	chr11:47786800-47790400	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr11:47787000-47789800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:47787000-47789800	Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr11:47787000-47790000	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr11:47787000-47790000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:47787000-47790000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:47787000-47790200	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr11:47787000-47790400	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr11:47787000-47790400	Active TSS	HSMM	muscle
24	chr11:47787200-47789800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:47787200-47789800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:47787200-47790000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:47787200-47790000	Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr11:47787200-47790000	Active TSS	Left Ventricle	heart
29	chr11:47787200-47790200	Active TSS	H9 Cell Line	embryonic stem cell
30	chr11:47787200-47790200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:47787200-47790200	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr11:47787200-47790200	Active TSS	Right Ventricle	heart
33	chr11:47787400-47789800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:47787400-47789800	Active TSS	Ovary	ovary
35	chr11:47787400-47789800	Active TSS	Sigmoid Colon	Sigmoid Colon
36	chr11:47787400-47790000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:47787400-47790000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:47787400-47790000	Active TSS	Esophagus	oesophagus
39	chr11:47787400-47790000	Active TSS	Pancreas	Pancrea
40	chr11:47787400-47790000	Active TSS	Psoas Muscle	Psoas
41	chr11:47787400-47790200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:47787400-47790200	Active TSS	Colon Smooth Muscle	Colon
43	chr11:47787600-47789800	Active TSS	Brain Anterior Caudate	brain
44	chr11:47787600-47789800	Active TSS	Thymus	Thymus
45	chr11:47787600-47790000	Active TSS	Gastric	stomach
46	chr11:47787600-47790000	Active TSS	Stomach Mucosa	stomach
47	chr11:47787600-47790200	Active TSS	Aorta	Aorta
48	chr11:47787800-47789800	Active TSS	Fetal Brain Female	brain
49	chr11:47787800-47790200	Active TSS	Brain Hippocampus Middle	brain
50	chr11:47787800-47790200	Active TSS	Brain Substantia Nigra	brain

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