Variant report

Variant	rs7111576
Chromosome Location	chr11:47787445-47787446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:47785710..47787900-chr11:47788302..47790353,2	K562	blood:
2	chr11:47573074..47575755-chr11:47786492..47788790,2	MCF-7	breast:
3	chr11:47775684..47777811-chr11:47784921..47787606,4	K562	blood:
4	chr11:47766940..47769464-chr11:47787267..47790011,2	MCF-7	breast:
5	chr11:47663509..47666496-chr11:47787150..47790595,4	MCF-7	breast:
6	chr11:47777903..47779990-chr11:47786996..47788801,2	K562	blood:
7	chr11:47787149..47790720-chr11:47868235..47871590,6	MCF-7	breast:
8	chr11:47662615..47665881-chr11:47786940..47791485,8	K562	blood:
9	chr11:47785352..47787641-chr11:47860317..47862615,2	K562	blood:
10	chr11:47785484..47788577-chr11:47791661..47794757,3	K562	blood:
11	chr11:47787394..47789838-chr11:47868299..47871448,5	MCF-7	breast:
12	chr11:47603018..47605507-chr11:47787325..47789892,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000109919	Chromatin interaction
ENSG00000213619	Chromatin interaction
ENSG00000109920	Chromatin interaction
ENSG00000149187	Chromatin interaction
ENSG00000030066	Chromatin interaction

Extended variants
information (count: 143 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10458914	0.81[ASN][1000 genomes]
rs10458915	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1056387	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10742817	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10742820	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10742824	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769285	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10769299	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10769300	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838736	0.89[ASN][1000 genomes]
rs10838739	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10838740	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838741	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10838745	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10838746	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838751	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838758	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10838759	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10838760	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10838763	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10838766	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838767	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838768	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838769	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838771	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838773	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838774	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838775	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838776	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838777	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10838782	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10838784	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10838786	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11039329	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039336	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11039337	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039345	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039354	0.86[EUR][1000 genomes]
rs11039373	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11039376	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11039377	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11039379	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11039392	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11039398	0.80[ASN][1000 genomes]
rs11039401	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11039402	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11039414	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11039415	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039419	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039429	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11039431	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11039432	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11039434	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12223593	0.84[ASN][1000 genomes]
rs12225854	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12226431	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12286721	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12360643	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12362318	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12366244	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12421563	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12576933	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12577383	0.84[ASN][1000 genomes]
rs12785949	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1471712	0.82[ASN][1000 genomes]
rs1563820	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1563821	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2046377	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2125838	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2170815	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2290851	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28617307	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2869534	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2869541	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2904127	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3758655	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3816605	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3886262	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4539273	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4543938	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4752792	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4752796	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4752798	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4752858	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4752860	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4752865	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60833259	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61895760	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6485763	0.86[ASN][1000 genomes]
rs6485773	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6485775	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6485778	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6485786	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7101597	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7102205	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7105791	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7107792	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7107922	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7108479	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7110300	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7111509	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7111606	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7112248	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7114011	0.81[ASN][1000 genomes]
rs7114813	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7115228	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7116320	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7116346	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7116970	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7118747	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7121038	0.82[ASN][1000 genomes]
rs7122182	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7122217	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7123952	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7124396	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7129237	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7129797	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7131262	0.81[ASN][1000 genomes]
rs754434	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7925211	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7927445	0.84[ASN][1000 genomes]
rs7929014	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7929725	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7932703	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7933184	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7933896	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7935344	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7935521	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7935528	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7936948	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7939420	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7941399	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7943213	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7943464	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7944084	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7945312	0.89[ASN][1000 genomes]
rs7948468	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7950674	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9633830	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469858	chr11:47647515-47837172	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
3	nsv832143	chr11:47700808-47883540	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7111576	FNBP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47769000-47787600	Weak transcription	Stomach Mucosa	stomach
2	chr11:47780200-47788000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:47784800-47787600	Weak transcription	Gastric	stomach
4	chr11:47785400-47787600	Weak transcription	Spleen	Spleen
5	chr11:47786400-47790200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:47786600-47788000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:47786600-47788000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:47786600-47788000	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr11:47786600-47788200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:47786600-47789800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:47786600-47790000	Active TSS	H1 Cell Line	embryonic stem cell
12	chr11:47786600-47790000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:47786600-47790000	Active TSS	Fetal Kidney	kidney
14	chr11:47786600-47790000	Active TSS	GM12878-XiMat	blood
15	chr11:47786800-47788000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr11:47786800-47789400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:47786800-47789600	Active TSS	Duodenum Mucosa	Duodenum
18	chr11:47786800-47789600	Active TSS	Stomach Smooth Muscle	stomach
19	chr11:47786800-47789800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:47786800-47789800	Active TSS	A549	lung
21	chr11:47786800-47789800	Active TSS	K562	blood
22	chr11:47786800-47790000	Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr11:47786800-47790000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:47786800-47790000	Active TSS	Brain Germinal Matrix	brain
25	chr11:47786800-47790200	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr11:47786800-47790200	Active TSS	Right Atrium	heart
27	chr11:47786800-47790400	Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr11:47787000-47787600	Enhancers	Brain Substantia Nigra	brain
29	chr11:47787000-47787600	Weak transcription	Fetal Heart	heart
30	chr11:47787000-47787600	Active TSS	HepG2	liver
31	chr11:47787000-47787800	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
32	chr11:47787000-47787800	Flanking Active TSS	Fetal Thymus	thymus
33	chr11:47787000-47788400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:47787000-47789200	Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr11:47787000-47789200	Active TSS	Muscle Satellite Cultured Cells	--
36	chr11:47787000-47789400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:47787000-47789400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr11:47787000-47789400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:47787000-47789400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:47787000-47789400	Active TSS	HSMMtube	muscle
41	chr11:47787000-47789400	Active TSS	NH-A	brain
42	chr11:47787000-47789400	Active TSS	NHDF-Ad	bronchial
43	chr11:47787000-47789400	Active TSS	NHLF	lung
44	chr11:47787000-47789600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:47787000-47789600	Active TSS	Hela-S3	cervix
46	chr11:47787000-47789600	Active TSS	HMEC	breast
47	chr11:47787000-47789600	Active TSS	Osteobl	bone
48	chr11:47787000-47789800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:47787000-47789800	Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr11:47787000-47790000	Active TSS	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links