Variant report
Variant | rs10749239 |
---|---|
Chromosome Location | chr10:118823765-118823766 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:118816372..118819335-chr10:118823062..118827283,4 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10749232 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10787734 | 1.00[CHB][hapmap] |
rs10787755 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs11197905 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs1898346 | 0.94[ASN][1000 genomes] |
rs1898356 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs1905537 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2901108 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs3981233 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs4752022 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs4752023 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs4752025 | 0.82[ASN][1000 genomes] |
rs4752027 | 0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs4752029 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs6585423 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs6585427 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs7076113 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs7079998 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs7085068 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs7085319 | 0.94[ASN][1000 genomes] |
rs7096110 | 1.00[ASN][1000 genomes] |
rs7903411 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs7906476 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv832002 | chr10:118797070-119005840 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 24 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:118822600-118826200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |