Variant report

Variant	rs11197905
Chromosome Location	chr10:118886305-118886306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr10:118886213-118886607	H1-hESC	embryonic stem cell:	n/a	chr10:118886343-118886350 chr10:118886343-118886350 chr10:118886343-118886350 chr10:118886342-118886354
2	E2F6	chr10:118886233-118886538	H1-hESC	embryonic stem cell:	n/a	chr10:118886343-118886350 chr10:118886343-118886350 chr10:118886343-118886350 chr10:118886342-118886354
3	E2F6	chr10:118886228-118886469	K562	blood:	n/a	chr10:118886343-118886350 chr10:118886343-118886350 chr10:118886343-118886350 chr10:118886342-118886354

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:118886279-118886329	AG09319	gingival:	n/a
2	chr10:118886279-118886329	HEEpiC	esophagus:	n/a
3	chr10:118886279-118886329	AG04449	skin:	fetal
4	chr10:118886279-118886329	HNPCEpiC	eye:	n/a
5	chr10:118886279-118886329	SK-N-SH	brain:	n/a
6	chr10:118886279-118886329	AoSMC	blood vessel:	n/a
7	chr10:118886279-118886329	RPTEC	kidney:	n/a
8	chr10:118886279-118886329	HRPEpiC	eye:	n/a
9	chr10:118886279-118886329	BJ	skin:	n/a
10	chr10:118886279-118886329	HMEC	breast:	n/a
11	chr10:118886279-118886329	U87	brain:	n/a
12	chr10:118886279-118886329	HepG2	liver:	n/a
13	chr10:118886279-118886329	T-47D	breast:	n/a
14	chr10:118886279-118886329	LNCaP	prostate:	n/a
15	chr10:118886279-118886329	HCPEpiC	choroid plexus:	n/a
16	chr10:118886279-118886329	AG09309	skin:	n/a
17	chr10:118886279-118886329	MCF10A-Er-Src	breast:	n/a
18	chr10:118886279-118886329	NHDF-neo	bronchial:	n/a
19	chr10:118886279-118886329	HEK293	kidney:	embryo
20	chr10:118886279-118886329	NH-A	brain:	n/a
21	chr10:118886279-118886329	PFSK-1	brain:	n/a
22	chr10:118886279-118886329	K562	blood:	n/a
23	chr10:118886279-118886329	Jurkat	blood:	n/a
24	chr10:118886279-118886329	SK-N-SH_RA	brain:	n/a
25	chr10:118886279-118886329	HPAEpiC	pulmonary alveolar:	n/a
26	chr10:118886279-118886329	ProgFib	skin:	n/a
27	chr10:118886279-118886329	PrEC	prostate:	n/a
28	chr10:118886279-118886329	SK-N-MC	brain:	n/a
29	chr10:118886279-118886329	SKMC	muscle:	n/a
30	chr10:118886279-118886329	A549	lung:	n/a
31	chr10:118886279-118886329	Hepatocyte	liver:	n/a
32	chr10:118886279-118886329	NHBE	bronchial:	n/a
33	chr10:118886279-118886329	BE2_C	brain:	n/a
34	chr10:118886279-118886329	HUVEC	blood vessel:	n/a
35	chr10:118886279-118886329	GM06990	blood:	n/a
36	chr10:118886279-118886329	HRE	kidney:	n/a
37	chr10:118886279-118886329	Caco-2	colon:	n/a
38	chr10:118886279-118886329	HCM	heart:	n/a
39	chr10:118886279-118886329	HIPEpiC	eye:	n/a
40	chr10:118886279-118886329	PANC-1	pancreas:	n/a
41	chr10:118886279-118886329	CMK	blood:	n/a
42	chr10:118886279-118886329	ovcar-3	ovarian:	n/a
43	chr10:118886279-118886329	HL-60	blood:	n/a
44	chr10:118886279-118886329	ECC-1	luminal epithelium:	n/a
45	chr10:118886279-118886329	GM12891	blood:	n/a
46	chr10:118886279-118886329	AG04450	lung:	fetal
47	chr10:118886279-118886329	IMR90	lung:	fetal
48	chr10:118886279-118886329	H1-hESC	embryonic stem cell:	embryo
49	chr10:118886279-118886329	HRCEpiC	kidney:	n/a
50	chr10:118886279-118886329	AG10803	skin:	n/a

No data

Variant related genes	Relation type
KIAA1598	TF binding region
KIAA1598	CpG island

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10749232	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10749239	1.00[ASN][1000 genomes]
rs10787734	1.00[CHB][hapmap]
rs10787755	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1898346	0.94[ASN][1000 genomes]
rs1898356	1.00[ASN][1000 genomes]
rs1905537	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2901108	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3981233	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4752022	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4752023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4752025	0.82[ASN][1000 genomes]
rs4752027	1.00[ASN][1000 genomes]
rs4752029	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6585423	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6585427	1.00[ASN][1000 genomes]
rs7076113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7079998	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7085068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7085319	0.94[ASN][1000 genomes]
rs7096110	1.00[ASN][1000 genomes]
rs7903411	1.00[ASN][1000 genomes]
rs7906476	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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