Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118705537..118708825-chr10:118833697..118836259,3	MCF-7	breast:
2	chr10:118764171..118766550-chr10:118834515..118836034,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187164	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10749232	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10749239	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10787734	1.00[CHB][hapmap]
rs10787755	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11197905	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1898346	0.94[ASN][1000 genomes]
rs1898356	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1905537	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2901108	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs363360	1.00[MEX][hapmap]
rs3981233	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4752022	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4752023	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4752025	0.82[ASN][1000 genomes]
rs4752027	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6585423	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6585427	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7076113	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7079998	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7085068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7085319	0.94[ASN][1000 genomes]
rs7096110	1.00[ASN][1000 genomes]
rs7903411	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7906476	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118832800-118835200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:118834800-118837600	Weak transcription	A549	lung
3	chr10:118835000-118837800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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