Variant report
| Variant | rs4752022 |
|---|---|
| Chromosome Location | chr10:118772019-118772020 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000187164 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10749232 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10787734 | 1.00[CHB][hapmap];0.94[YRI][hapmap] |
| rs10787755 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11197905 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1905537 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs2429364 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.94[YRI][hapmap] |
| rs2449807 | 1.00[ASW][hapmap];0.95[LWK][hapmap];0.88[MKK][hapmap];0.94[YRI][hapmap] |
| rs2531691 | 1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.94[YRI][hapmap] |
| rs2627192 | 0.88[YRI][hapmap] |
| rs2627193 | 0.94[YRI][hapmap] |
| rs2901108 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs3981233 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap] |
| rs4752023 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs4752029 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs6585423 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs7076113 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs7079998 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7085068 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7906476 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7919600 | 0.94[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2755506 | chr10:118748764-118800107 | Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv2287839 | chr10:118772019-118772020 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
