Variant report

Variant	rs2449807
Chromosome Location	chr10:118642077-118642078
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118636634..118640505-chr10:118641692..118646395,4	K562	blood:
2	chr10:118640643..118643048-chr10:118646002..118648138,2	MCF-7	breast:
3	chr10:118641858..118644146-chr10:118645128..118648052,2	MCF-7	breast:
4	chr10:118635573..118637268-chr10:118640587..118643263,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10787733	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10787734	0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10886018	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1905537	0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2083023	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2429364	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2531691	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2627192	0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2627193	0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3981233	1.00[ASW][hapmap];0.95[LWK][hapmap];0.94[MKK][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4103264	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752019	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752022	1.00[ASW][hapmap];0.95[LWK][hapmap];0.88[MKK][hapmap];0.94[YRI][hapmap]
rs7091456	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7093852	0.97[AFR][1000 genomes]
rs7903166	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904342	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7919600	0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118636600-118647800	Weak transcription	Liver	Liver
2	chr10:118637200-118648400	Weak transcription	Brain Substantia Nigra	brain
3	chr10:118637200-118658800	Weak transcription	Pancreas	Pancrea
4	chr10:118637600-118670400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:118637800-118643000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:118637800-118645000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:118637800-118648400	Weak transcription	Brain Angular Gyrus	brain
8	chr10:118638000-118643000	Weak transcription	Brain Anterior Caudate	brain
9	chr10:118638000-118645000	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:118638400-118643600	Weak transcription	HUVEC	blood vessel
11	chr10:118638600-118648400	Weak transcription	Fetal Intestine Large	intestine
12	chr10:118639000-118666600	Weak transcription	Fetal Intestine Small	intestine
13	chr10:118639400-118643200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:118639400-118645200	Weak transcription	Brain Germinal Matrix	brain
15	chr10:118639400-118646400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:118639600-118648000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:118639800-118643000	Weak transcription	A549	lung
18	chr10:118639800-118645200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:118639800-118645800	Weak transcription	Hela-S3	cervix
20	chr10:118640400-118645800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:118640400-118645800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:118640400-118646400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:118640400-118647800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:118640400-118649600	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr10:118640600-118645800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:118640600-118645800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:118640600-118646000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr10:118640600-118647800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr10:118640800-118645200	Weak transcription	NHEK	skin
30	chr10:118640800-118646000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr10:118640800-118646400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:118640800-118647600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr10:118640800-118647600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:118640800-118651600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:118641000-118642800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:118641000-118645800	Weak transcription	HSMMtube	muscle
37	chr10:118641000-118647200	Weak transcription	HSMM	muscle
38	chr10:118641000-118647600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:118641000-118650600	Weak transcription	Adipose Nuclei	Adipose
40	chr10:118641400-118642200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:118641400-118648000	Weak transcription	Lung	lung
42	chr10:118641600-118642200	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr10:118641800-118642600	Enhancers	Fetal Brain Male	brain
44	chr10:118641800-118647600	Weak transcription	NH-A	brain
45	chr10:118641800-118648000	Weak transcription	Esophagus	oesophagus
46	chr10:118641800-118648000	Weak transcription	Stomach Mucosa	stomach
47	chr10:118641800-118658800	Weak transcription	K562	blood
48	chr10:118641800-118665200	Weak transcription	HepG2	liver
49	chr10:118641800-118665400	Weak transcription	Fetal Brain Female	brain

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