Variant report

Variant	rs10787733
Chromosome Location	chr10:118710556-118710557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118705428..118708350-chr10:118709958..118711491,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10787734	0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10886018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1905537	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2083023	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2429364	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449807	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2531691	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2627192	0.88[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2627193	0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3981233	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4103264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752022	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs7091456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7093852	1.00[AFR][1000 genomes]
rs7903166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904342	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7919600	0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:118699200-118712400	Weak transcription	Esophagus	oesophagus
3	chr10:118699200-118724200	Weak transcription	Fetal Intestine Small	intestine
4	chr10:118699200-118740600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:118699200-118748200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:118700000-118736800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:118700200-118712400	Weak transcription	Placenta	Placenta
8	chr10:118701000-118733400	Weak transcription	Fetal Kidney	kidney
9	chr10:118702400-118727200	Weak transcription	Stomach Mucosa	stomach
10	chr10:118703200-118721000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:118703400-118720600	Weak transcription	Fetal Brain Male	brain
12	chr10:118703400-118737000	Weak transcription	Aorta	Aorta
13	chr10:118703600-118740000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:118703600-118752200	Weak transcription	Gastric	stomach
15	chr10:118703800-118720800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:118704200-118716600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:118704200-118721000	Weak transcription	Ovary	ovary
18	chr10:118704200-118726600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:118707600-118714000	Weak transcription	Brain Anterior Caudate	brain
20	chr10:118707600-118714000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr10:118707800-118721000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr10:118708000-118711800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr10:118708000-118714000	Weak transcription	Brain Angular Gyrus	brain
24	chr10:118708000-118715200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:118708000-118719200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:118708000-118719200	Weak transcription	NH-A	brain
27	chr10:118708000-118719600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:118708000-118725800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:118708000-118726600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr10:118708000-118735600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:118708200-118711400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr10:118708200-118711800	Weak transcription	HMEC	breast
33	chr10:118708200-118730800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr10:118708200-118733200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:118708200-118734000	Weak transcription	HSMM	muscle
36	chr10:118708200-118744000	Weak transcription	K562	blood
37	chr10:118708400-118712200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:118708600-118712200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:118708600-118713800	Weak transcription	Brain Substantia Nigra	brain
40	chr10:118708600-118736200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr10:118709200-118714200	Strong transcription	A549	lung
42	chr10:118709400-118713800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:118709600-118711200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:118709600-118711200	Strong transcription	Brain Germinal Matrix	brain
45	chr10:118709600-118711400	Strong transcription	Liver	Liver
46	chr10:118709600-118714200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:118709800-118711000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr10:118709800-118711000	Strong transcription	Fetal Stomach	stomach
49	chr10:118709800-118711200	Strong transcription	HUVEC	blood vessel
50	chr10:118710000-118711000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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