Variant report

Variant	rs2083023
Chromosome Location	chr10:118740174-118740175
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118737800..118740271-chr10:118750000..118751537,2	MCF-7	breast:
2	chr10:118738451..118741295-chr10:118744110..118745939,2	K562	blood:
3	chr10:118734513..118736119-chr10:118738818..118741061,2	MCF-7	breast:
4	chr10:118738234..118741187-chr10:118764097..118766554,3	MCF-7	breast:
5	chr10:118735546..118737838-chr10:118739779..118741710,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187164	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10787733	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10787734	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10886018	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1905537	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2429364	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449807	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2531691	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2627192	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2627193	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3981233	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4103264	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752019	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7091456	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7093852	0.97[AFR][1000 genomes]
rs7903166	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904342	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7919600	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118699200-118740600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:118699200-118748200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:118703600-118752200	Weak transcription	Gastric	stomach
4	chr10:118708200-118744000	Weak transcription	K562	blood
5	chr10:118721600-118764000	Weak transcription	Ovary	ovary
6	chr10:118725200-118763000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:118725600-118740600	Weak transcription	Fetal Intestine Small	intestine
8	chr10:118727600-118743400	Weak transcription	HepG2	liver
9	chr10:118734200-118748200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:118734400-118744000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:118735000-118743800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:118735000-118752000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:118735000-118762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:118735200-118744800	Weak transcription	HUVEC	blood vessel
15	chr10:118736200-118751400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:118736400-118753000	Weak transcription	Liver	Liver
17	chr10:118736800-118743800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:118737000-118740200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:118737200-118744000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:118737200-118750000	Weak transcription	A549	lung
21	chr10:118737200-118762800	Weak transcription	NHEK	skin
22	chr10:118737400-118760200	Weak transcription	Pancreas	Pancrea
23	chr10:118737600-118740600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr10:118737600-118743400	Weak transcription	Fetal Intestine Large	intestine
25	chr10:118738400-118741000	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr10:118738400-118744200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:118738800-118741800	Weak transcription	Brain Anterior Caudate	brain
28	chr10:118738800-118749200	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr10:118738800-118762800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:118739000-118748200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:118739200-118740200	Weak transcription	Brain Substantia Nigra	brain
32	chr10:118739200-118745200	Weak transcription	Hela-S3	cervix
33	chr10:118739200-118750000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr10:118739400-118743000	Weak transcription	Aorta	Aorta
35	chr10:118739400-118743600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:118739400-118744000	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:118739400-118748200	Weak transcription	Brain Germinal Matrix	brain
38	chr10:118739400-118750800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:118739600-118741800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr10:118739600-118744000	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:118739600-118748200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr10:118739800-118741800	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:118739800-118741800	Weak transcription	Fetal Brain Male	brain
44	chr10:118739800-118742000	Weak transcription	Brain Angular Gyrus	brain
45	chr10:118739800-118748400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr10:118740000-118743400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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